Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03025 and ABID97_RS03030 are separated by 1 nucleotides ABID97_RS03030 and ABID97_RS03035 are separated by 10 nucleotides
ABID97_RS03025: ABID97_RS03025 - feruloyl-CoA synthase, at 612,915 to 614,720
_RS03025
ABID97_RS03030: ABID97_RS03030 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 614,722 to 615,663
_RS03030
ABID97_RS03035: ABID97_RS03035 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 615,674 to 616,666
_RS03035
Position (kb) 614
615
616 Strain fitness (log2 ratio) -2
-1
0
1
2 at 613.873 kb on + strand, within ABID97_RS03025 at 613.873 kb on + strand, within ABID97_RS03025 at 613.874 kb on - strand, within ABID97_RS03025 at 614.078 kb on - strand, within ABID97_RS03025 at 614.078 kb on - strand, within ABID97_RS03025 at 614.078 kb on - strand, within ABID97_RS03025 at 614.243 kb on - strand, within ABID97_RS03025 at 614.263 kb on + strand, within ABID97_RS03025 at 614.263 kb on + strand, within ABID97_RS03025 at 614.263 kb on + strand, within ABID97_RS03025 at 614.264 kb on - strand, within ABID97_RS03025 at 614.264 kb on - strand, within ABID97_RS03025 at 614.333 kb on - strand, within ABID97_RS03025 at 614.608 kb on + strand at 614.764 kb on + strand at 614.764 kb on + strand at 615.155 kb on + strand, within ABID97_RS03030 at 615.155 kb on + strand, within ABID97_RS03030 at 615.155 kb on + strand, within ABID97_RS03030 at 615.156 kb on - strand, within ABID97_RS03030 at 615.156 kb on - strand, within ABID97_RS03030 at 615.156 kb on - strand, within ABID97_RS03030 at 615.885 kb on + strand, within ABID97_RS03035 at 615.885 kb on + strand, within ABID97_RS03035 at 615.885 kb on + strand, within ABID97_RS03035 at 615.886 kb on - strand, within ABID97_RS03035 at 615.886 kb on - strand, within ABID97_RS03035 at 616.185 kb on + strand, within ABID97_RS03035 at 616.329 kb on + strand, within ABID97_RS03035 at 616.329 kb on + strand, within ABID97_RS03035 at 616.329 kb on + strand, within ABID97_RS03035 at 616.344 kb on + strand, within ABID97_RS03035 at 616.344 kb on + strand, within ABID97_RS03035 at 616.345 kb on - strand, within ABID97_RS03035 at 616.345 kb on - strand, within ABID97_RS03035 at 616.557 kb on + strand, within ABID97_RS03035 at 616.557 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.560 kb on + strand, within ABID97_RS03035 at 616.561 kb on - strand, within ABID97_RS03035 at 616.561 kb on - strand, within ABID97_RS03035
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 613,873 + ABID97_RS03025 0.53 -0.5 613,873 + ABID97_RS03025 0.53 -0.2 613,874 - ABID97_RS03025 0.53 -0.4 614,078 - ABID97_RS03025 0.64 -0.2 614,078 - ABID97_RS03025 0.64 -0.7 614,078 - ABID97_RS03025 0.64 +1.6 614,243 - ABID97_RS03025 0.74 -0.8 614,263 + ABID97_RS03025 0.75 +0.2 614,263 + ABID97_RS03025 0.75 -1.2 614,263 + ABID97_RS03025 0.75 +0.2 614,264 - ABID97_RS03025 0.75 -0.3 614,264 - ABID97_RS03025 0.75 +1.3 614,333 - ABID97_RS03025 0.79 -0.8 614,608 + +2.3 614,764 + -2.6 614,764 + +0.6 615,155 + ABID97_RS03030 0.46 -2.1 615,155 + ABID97_RS03030 0.46 -1.1 615,155 + ABID97_RS03030 0.46 +0.8 615,156 - ABID97_RS03030 0.46 +0.5 615,156 - ABID97_RS03030 0.46 -0.2 615,156 - ABID97_RS03030 0.46 +1.3 615,885 + ABID97_RS03035 0.21 -0.7 615,885 + ABID97_RS03035 0.21 +0.7 615,885 + ABID97_RS03035 0.21 +2.6 615,886 - ABID97_RS03035 0.21 -0.0 615,886 - ABID97_RS03035 0.21 +0.6 616,185 + ABID97_RS03035 0.51 -0.5 616,329 + ABID97_RS03035 0.66 -0.7 616,329 + ABID97_RS03035 0.66 -0.9 616,329 + ABID97_RS03035 0.66 -1.5 616,344 + ABID97_RS03035 0.67 -0.3 616,344 + ABID97_RS03035 0.67 -0.5 616,345 - ABID97_RS03035 0.68 -1.7 616,345 - ABID97_RS03035 0.68 -1.2 616,557 + ABID97_RS03035 0.89 +0.1 616,557 + ABID97_RS03035 0.89 +0.6 616,560 + ABID97_RS03035 0.89 -1.9 616,560 + ABID97_RS03035 0.89 -2.2 616,560 + ABID97_RS03035 0.89 -1.2 616,560 + ABID97_RS03035 0.89 -0.3 616,560 + ABID97_RS03035 0.89 +2.1 616,560 + ABID97_RS03035 0.89 -1.0 616,561 - ABID97_RS03035 0.89 +0.1 616,561 - ABID97_RS03035 0.89 -0.9
Or see this region's nucleotide sequence