Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS02585 and ABID97_RS02590 overlap by 56 nucleotides ABID97_RS02590 and ABID97_RS02595 are separated by 34 nucleotides ABID97_RS02595 and ABID97_RS02600 overlap by 4 nucleotides
ABID97_RS02585: ABID97_RS02585 - ion transporter, at 529,216 to 530,139
_RS02585
ABID97_RS02590: ABID97_RS02590 - YigZ family protein, at 530,084 to 530,674
_RS02590
ABID97_RS02595: ABID97_RS02595 - methionine biosynthesis protein MetW, at 530,709 to 531,296
_RS02595
ABID97_RS02600: ABID97_RS02600 - homoserine O-acetyltransferase, at 531,293 to 532,471
_RS02600
Position (kb) 530
531 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 529.110 kb on - strand at 529.110 kb on - strand at 529.110 kb on - strand at 529.163 kb on - strand at 529.163 kb on - strand at 529.163 kb on - strand at 529.498 kb on + strand, within ABID97_RS02585 at 529.498 kb on + strand, within ABID97_RS02585 at 529.498 kb on + strand, within ABID97_RS02585 at 529.498 kb on + strand, within ABID97_RS02585 at 529.498 kb on + strand, within ABID97_RS02585 at 529.498 kb on + strand, within ABID97_RS02585 at 529.498 kb on + strand, within ABID97_RS02585 at 529.498 kb on + strand, within ABID97_RS02585 at 529.499 kb on - strand, within ABID97_RS02585 at 529.499 kb on - strand, within ABID97_RS02585 at 529.499 kb on - strand, within ABID97_RS02585 at 529.499 kb on - strand, within ABID97_RS02585 at 529.499 kb on - strand, within ABID97_RS02585 at 529.552 kb on + strand, within ABID97_RS02585 at 529.552 kb on + strand, within ABID97_RS02585 at 529.552 kb on + strand, within ABID97_RS02585 at 529.552 kb on + strand, within ABID97_RS02585 at 529.553 kb on - strand, within ABID97_RS02585 at 529.618 kb on + strand, within ABID97_RS02585 at 529.619 kb on - strand, within ABID97_RS02585 at 529.619 kb on - strand, within ABID97_RS02585 at 529.682 kb on - strand, within ABID97_RS02585 at 529.694 kb on - strand, within ABID97_RS02585 at 529.792 kb on + strand, within ABID97_RS02585 at 529.792 kb on + strand, within ABID97_RS02585 at 529.792 kb on + strand, within ABID97_RS02585 at 529.792 kb on + strand, within ABID97_RS02585 at 529.792 kb on + strand, within ABID97_RS02585 at 529.792 kb on + strand, within ABID97_RS02585 at 529.792 kb on + strand, within ABID97_RS02585 at 529.793 kb on - strand, within ABID97_RS02585 at 529.793 kb on - strand, within ABID97_RS02585 at 529.793 kb on - strand, within ABID97_RS02585 at 529.793 kb on - strand, within ABID97_RS02585 at 529.793 kb on - strand, within ABID97_RS02585 at 529.793 kb on - strand, within ABID97_RS02585 at 529.843 kb on + strand, within ABID97_RS02585 at 529.843 kb on + strand, within ABID97_RS02585 at 529.843 kb on + strand, within ABID97_RS02585 at 529.844 kb on - strand, within ABID97_RS02585 at 529.844 kb on - strand, within ABID97_RS02585 at 530.085 kb on + strand at 530.085 kb on + strand at 530.085 kb on + strand at 530.086 kb on - strand at 530.086 kb on - strand at 530.262 kb on + strand, within ABID97_RS02590 at 530.262 kb on + strand, within ABID97_RS02590 at 530.346 kb on + strand, within ABID97_RS02590 at 530.347 kb on - strand, within ABID97_RS02590 at 530.391 kb on + strand, within ABID97_RS02590 at 531.343 kb on - strand at 531.363 kb on + strand at 531.363 kb on + strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.364 kb on - strand at 531.420 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.609 kb on + strand, within ABID97_RS02600 at 531.610 kb on - strand, within ABID97_RS02600 at 531.610 kb on - strand, within ABID97_RS02600 at 531.610 kb on - strand, within ABID97_RS02600 at 531.627 kb on + strand, within ABID97_RS02600 at 531.628 kb on - strand, within ABID97_RS02600 at 531.628 kb on - strand, within ABID97_RS02600 at 531.660 kb on + strand, within ABID97_RS02600 at 531.661 kb on - strand, within ABID97_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 529,110 - -0.0 529,110 - -0.6 529,110 - +1.8 529,163 - +0.6 529,163 - +2.5 529,163 - -0.1 529,498 + ABID97_RS02585 0.31 +5.7 529,498 + ABID97_RS02585 0.31 +0.4 529,498 + ABID97_RS02585 0.31 -0.2 529,498 + ABID97_RS02585 0.31 -0.9 529,498 + ABID97_RS02585 0.31 -0.9 529,498 + ABID97_RS02585 0.31 +6.8 529,498 + ABID97_RS02585 0.31 -0.3 529,498 + ABID97_RS02585 0.31 +0.5 529,499 - ABID97_RS02585 0.31 -1.5 529,499 - ABID97_RS02585 0.31 -0.6 529,499 - ABID97_RS02585 0.31 +0.1 529,499 - ABID97_RS02585 0.31 -0.9 529,499 - ABID97_RS02585 0.31 +0.5 529,552 + ABID97_RS02585 0.36 -1.1 529,552 + ABID97_RS02585 0.36 -0.8 529,552 + ABID97_RS02585 0.36 +0.1 529,552 + ABID97_RS02585 0.36 -0.2 529,553 - ABID97_RS02585 0.36 -0.6 529,618 + ABID97_RS02585 0.44 +0.4 529,619 - ABID97_RS02585 0.44 -0.5 529,619 - ABID97_RS02585 0.44 -0.1 529,682 - ABID97_RS02585 0.50 -0.5 529,694 - ABID97_RS02585 0.52 -0.2 529,792 + ABID97_RS02585 0.62 -0.9 529,792 + ABID97_RS02585 0.62 -0.7 529,792 + ABID97_RS02585 0.62 -0.2 529,792 + ABID97_RS02585 0.62 -1.6 529,792 + ABID97_RS02585 0.62 +1.0 529,792 + ABID97_RS02585 0.62 -0.4 529,792 + ABID97_RS02585 0.62 +1.7 529,793 - ABID97_RS02585 0.62 +1.2 529,793 - ABID97_RS02585 0.62 +0.1 529,793 - ABID97_RS02585 0.62 -0.5 529,793 - ABID97_RS02585 0.62 -1.1 529,793 - ABID97_RS02585 0.62 +4.5 529,793 - ABID97_RS02585 0.62 -1.8 529,843 + ABID97_RS02585 0.68 -0.5 529,843 + ABID97_RS02585 0.68 -0.4 529,843 + ABID97_RS02585 0.68 -0.6 529,844 - ABID97_RS02585 0.68 -0.3 529,844 - ABID97_RS02585 0.68 -0.4 530,085 + -1.0 530,085 + +0.5 530,085 + -1.0 530,086 - -0.0 530,086 - -0.5 530,262 + ABID97_RS02590 0.30 +2.1 530,262 + ABID97_RS02590 0.30 -0.4 530,346 + ABID97_RS02590 0.44 -0.4 530,347 - ABID97_RS02590 0.45 -0.9 530,391 + ABID97_RS02590 0.52 -0.4 531,343 - +0.7 531,363 + -0.4 531,363 + +1.1 531,364 - +1.4 531,364 - +3.1 531,364 - +1.3 531,364 - +2.2 531,364 - +1.7 531,364 - +3.1 531,420 + ABID97_RS02600 0.11 +1.1 531,609 + ABID97_RS02600 0.27 -0.6 531,609 + ABID97_RS02600 0.27 +1.5 531,609 + +0.6 531,609 + ABID97_RS02600 0.27 +0.9 531,609 + ABID97_RS02600 0.27 -0.7 531,609 + ABID97_RS02600 0.27 +1.1 531,610 - ABID97_RS02600 0.27 +1.1 531,610 - ABID97_RS02600 0.27 +1.3 531,610 - ABID97_RS02600 0.27 +0.1 531,627 + ABID97_RS02600 0.28 +1.5 531,628 - ABID97_RS02600 0.28 -0.8 531,628 - ABID97_RS02600 0.28 +0.2 531,660 + ABID97_RS02600 0.31 +2.1 531,661 - ABID97_RS02600 0.31 +1.5
Or see this region's nucleotide sequence