Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28830 and ABID97_RS28835 are separated by 86 nucleotides ABID97_RS28835 and ABID97_RS28840 overlap by 4 nucleotides ABID97_RS28840 and ABID97_RS28845 are separated by 38 nucleotides
ABID97_RS28830: ABID97_RS28830 - GntR family transcriptional regulator, at 683,492 to 684,271
_RS28830
ABID97_RS28835: ABID97_RS28835 - cytochrome c family protein, at 684,358 to 684,753
_RS28835
ABID97_RS28840: ABID97_RS28840 - ferritin-like domain-containing protein, at 684,750 to 685,319
_RS28840
ABID97_RS28845: ABID97_RS28845 - RNA polymerase sigma factor, at 685,358 to 686,065
_RS28845
Position (kb) 684
685 Strain fitness (log2 ratio) -1
0
1
2 at 683.549 kb on + strand at 683.549 kb on + strand at 683.549 kb on + strand at 683.933 kb on + strand, within ABID97_RS28830 at 683.934 kb on - strand, within ABID97_RS28830 at 683.934 kb on - strand, within ABID97_RS28830 at 684.456 kb on - strand, within ABID97_RS28835 at 684.456 kb on - strand, within ABID97_RS28835 at 684.557 kb on + strand, within ABID97_RS28835 at 684.558 kb on - strand, within ABID97_RS28835 at 684.659 kb on + strand, within ABID97_RS28835 at 684.660 kb on - strand, within ABID97_RS28835 at 684.890 kb on - strand, within ABID97_RS28840 at 685.121 kb on - strand, within ABID97_RS28840 at 685.323 kb on + strand at 685.324 kb on - strand at 685.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 683,549 + +1.0 683,549 + -0.6 683,549 + -0.5 683,933 + ABID97_RS28830 0.57 -0.4 683,934 - ABID97_RS28830 0.57 +0.7 683,934 - ABID97_RS28830 0.57 +2.0 684,456 - ABID97_RS28835 0.25 -0.0 684,456 - ABID97_RS28835 0.25 +0.6 684,557 + ABID97_RS28835 0.50 -0.6 684,558 - ABID97_RS28835 0.51 +0.4 684,659 + ABID97_RS28835 0.76 -0.5 684,660 - ABID97_RS28835 0.76 +1.8 684,890 - ABID97_RS28840 0.25 -0.7 685,121 - ABID97_RS28840 0.65 +0.6 685,323 + -1.4 685,324 - +1.4 685,324 - -0.2
Or see this region's nucleotide sequence