Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28025 and ABID97_RS28030 overlap by 10 nucleotides ABID97_RS28030 and ABID97_RS28035 are separated by 219 nucleotides
ABID97_RS28025: ABID97_RS28025 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 521,967 to 523,736
_RS28025
ABID97_RS28030: ABID97_RS28030 - branched-chain amino acid ABC transporter permease, at 523,727 to 524,575
_RS28030
ABID97_RS28035: ABID97_RS28035 - fumarylacetoacetate hydrolase family protein, at 524,795 to 525,589
_RS28035
Position (kb) 523
524
525 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 522.997 kb on + strand, within ABID97_RS28025 at 523.114 kb on + strand, within ABID97_RS28025 at 523.115 kb on - strand, within ABID97_RS28025 at 523.253 kb on - strand, within ABID97_RS28025 at 523.253 kb on - strand, within ABID97_RS28025 at 523.306 kb on + strand, within ABID97_RS28025 at 523.360 kb on + strand, within ABID97_RS28025 at 523.361 kb on - strand, within ABID97_RS28025 at 523.361 kb on - strand, within ABID97_RS28025 at 523.630 kb on + strand at 524.318 kb on + strand, within ABID97_RS28030 at 524.418 kb on + strand, within ABID97_RS28030 at 524.702 kb on + strand at 524.703 kb on - strand at 524.979 kb on - strand, within ABID97_RS28035 at 524.984 kb on + strand, within ABID97_RS28035 at 524.985 kb on - strand, within ABID97_RS28035 at 525.195 kb on - strand, within ABID97_RS28035 at 525.275 kb on + strand, within ABID97_RS28035 at 525.419 kb on + strand, within ABID97_RS28035 at 525.420 kb on - strand, within ABID97_RS28035 at 525.432 kb on - strand, within ABID97_RS28035
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 522,997 + ABID97_RS28025 0.58 -0.2 523,114 + ABID97_RS28025 0.65 +0.7 523,115 - ABID97_RS28025 0.65 +3.5 523,253 - ABID97_RS28025 0.73 +3.3 523,253 - ABID97_RS28025 0.73 -1.4 523,306 + ABID97_RS28025 0.76 -0.0 523,360 + ABID97_RS28025 0.79 -0.2 523,361 - ABID97_RS28025 0.79 -0.2 523,361 - ABID97_RS28025 0.79 -1.6 523,630 + -0.5 524,318 + ABID97_RS28030 0.70 -2.1 524,418 + ABID97_RS28030 0.81 -0.1 524,702 + +1.8 524,703 - -0.2 524,979 - ABID97_RS28035 0.23 -0.7 524,984 + ABID97_RS28035 0.24 +2.0 524,985 - ABID97_RS28035 0.24 +2.2 525,195 - ABID97_RS28035 0.50 -2.6 525,275 + ABID97_RS28035 0.60 +0.6 525,419 + ABID97_RS28035 0.78 -0.4 525,420 - ABID97_RS28035 0.79 -0.6 525,432 - ABID97_RS28035 0.80 +0.9
Or see this region's nucleotide sequence