Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26630

Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26625 and ABID97_RS26630 are separated by 48 nucleotidesABID97_RS26630 and ABID97_RS26635 are separated by 72 nucleotides ABID97_RS26625: ABID97_RS26625 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 249,850 to 250,827 _RS26625 ABID97_RS26630: ABID97_RS26630 - aspartate aminotransferase family protein, at 250,876 to 252,285 _RS26630 ABID97_RS26635: ABID97_RS26635 - LysR family transcriptional regulator, at 252,358 to 253,275 _RS26635 Position (kb) 250 251 252 253Strain fitness (log2 ratio) -1 0 1at 250.358 kb on + strand, within ABID97_RS26625at 251.258 kb on - strand, within ABID97_RS26630at 251.258 kb on - strand, within ABID97_RS26630at 251.312 kb on + strand, within ABID97_RS26630at 251.316 kb on + strand, within ABID97_RS26630at 251.317 kb on - strand, within ABID97_RS26630at 251.826 kb on - strand, within ABID97_RS26630at 252.368 kb on + strandat 252.369 kb on - strandat 252.369 kb on - strandat 252.949 kb on + strand, within ABID97_RS26635at 253.046 kb on - strand, within ABID97_RS26635at 253.192 kb on + strandat 253.192 kb on + strandat 253.192 kb on + strandat 253.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X
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250,358 + ABID97_RS26625 0.52 +0.2
251,258 - ABID97_RS26630 0.27 +1.5
251,258 - ABID97_RS26630 0.27 +0.4
251,312 + ABID97_RS26630 0.31 +1.3
251,316 + ABID97_RS26630 0.31 +0.7
251,317 - ABID97_RS26630 0.31 -0.1
251,826 - ABID97_RS26630 0.67 -1.3
252,368 + -0.5
252,369 - -1.3
252,369 - -0.5
252,949 + ABID97_RS26635 0.64 -1.4
253,046 - ABID97_RS26635 0.75 +0.3
253,192 + -0.7
253,192 + -0.1
253,192 + -0.2
253,193 - +0.1

Or see this region's nucleotide sequence