Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25855

Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25850 and ABID97_RS25855 are separated by 64 nucleotidesABID97_RS25855 and ABID97_RS25860 are separated by 167 nucleotides ABID97_RS25850: ABID97_RS25850 - extracellular solute-binding protein, at 89,923 to 91,251 _RS25850 ABID97_RS25855: ABID97_RS25855 - dihydrodipicolinate synthase family protein, at 91,316 to 92,236 _RS25855 ABID97_RS25860: ABID97_RS25860 - LysR family transcriptional regulator, at 92,404 to 93,282 _RS25860 Position (kb) 91 92 93Strain fitness (log2 ratio) -1 0 1at 90.323 kb on + strand, within ABID97_RS25850at 90.396 kb on - strand, within ABID97_RS25850at 90.443 kb on + strand, within ABID97_RS25850at 90.446 kb on + strand, within ABID97_RS25850at 90.446 kb on + strand, within ABID97_RS25850at 90.627 kb on - strand, within ABID97_RS25850at 90.780 kb on - strand, within ABID97_RS25850at 90.782 kb on + strand, within ABID97_RS25850at 90.783 kb on - strand, within ABID97_RS25850at 90.881 kb on + strand, within ABID97_RS25850at 90.881 kb on + strand, within ABID97_RS25850at 90.881 kb on + strand, within ABID97_RS25850at 90.902 kb on + strand, within ABID97_RS25850at 91.266 kb on + strandat 91.267 kb on - strandat 91.821 kb on + strand, within ABID97_RS25855at 91.873 kb on - strand, within ABID97_RS25855at 92.737 kb on + strand, within ABID97_RS25860at 92.738 kb on - strand, within ABID97_RS25860

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X
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90,323 + ABID97_RS25850 0.30 -1.1
90,396 - ABID97_RS25850 0.36 -0.3
90,443 + ABID97_RS25850 0.39 +1.6
90,446 + ABID97_RS25850 0.39 -0.4
90,446 + ABID97_RS25850 0.39 -0.6
90,627 - ABID97_RS25850 0.53 -0.5
90,780 - ABID97_RS25850 0.64 -0.8
90,782 + ABID97_RS25850 0.65 +0.7
90,783 - ABID97_RS25850 0.65 -0.7
90,881 + ABID97_RS25850 0.72 +0.5
90,881 + ABID97_RS25850 0.72 +1.0
90,881 + ABID97_RS25850 0.72 +0.4
90,902 + ABID97_RS25850 0.74 -0.7
91,266 + +0.2
91,267 - -0.5
91,821 + ABID97_RS25855 0.55 -0.9
91,873 - ABID97_RS25855 0.60 -0.7
92,737 + ABID97_RS25860 0.38 -1.2
92,738 - ABID97_RS25860 0.38 +0.5

Or see this region's nucleotide sequence