Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21100 and ABID97_RS21105 overlap by 4 nucleotides ABID97_RS21105 and ABID97_RS21110 are separated by 31 nucleotides ABID97_RS21110 and ABID97_RS21115 are separated by 16 nucleotides ABID97_RS21115 and ABID97_RS21120 overlap by 17 nucleotides
ABID97_RS21100: ABID97_RS21100 - GntR family transcriptional regulator, at 4,356,567 to 4,357,322
_RS21100
ABID97_RS21105: ABID97_RS21105 - transporter substrate-binding domain-containing protein, at 4,357,319 to 4,358,119
_RS21105
ABID97_RS21110: ABID97_RS21110 - amino acid ABC transporter permease, at 4,358,151 to 4,358,807
_RS21110
ABID97_RS21115: ABID97_RS21115 - amino acid ABC transporter permease, at 4,358,824 to 4,359,477
_RS21115
ABID97_RS21120: ABID97_RS21120 - amino acid ABC transporter ATP-binding protein, at 4,359,461 to 4,360,246
_RS21120
Position (kb) 4358
4359 Strain fitness (log2 ratio) -1
0
1
2
3 at 4357.302 kb on + strand at 4357.303 kb on - strand at 4357.303 kb on - strand at 4357.303 kb on - strand at 4357.318 kb on + strand at 4357.595 kb on + strand, within ABID97_RS21105 at 4357.595 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4358.322 kb on + strand, within ABID97_RS21110 at 4358.322 kb on + strand, within ABID97_RS21110 at 4358.322 kb on + strand, within ABID97_RS21110 at 4358.455 kb on - strand, within ABID97_RS21110 at 4358.667 kb on + strand, within ABID97_RS21110 at 4358.736 kb on + strand, within ABID97_RS21110 at 4358.989 kb on + strand, within ABID97_RS21115 at 4358.990 kb on - strand, within ABID97_RS21115 at 4359.548 kb on + strand, within ABID97_RS21120
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 4,357,302 + +1.2 4,357,303 - -0.9 4,357,303 - +0.4 4,357,303 - +1.5 4,357,318 + -0.4 4,357,595 + ABID97_RS21105 0.34 -1.6 4,357,595 + ABID97_RS21105 0.34 +3.3 4,357,706 + ABID97_RS21105 0.48 -1.3 4,357,706 + ABID97_RS21105 0.48 +0.8 4,357,706 + ABID97_RS21105 0.48 +0.8 4,357,706 + ABID97_RS21105 0.48 -0.3 4,358,322 + ABID97_RS21110 0.26 +1.2 4,358,322 + ABID97_RS21110 0.26 +0.4 4,358,322 + ABID97_RS21110 0.26 +0.3 4,358,455 - ABID97_RS21110 0.46 +1.3 4,358,667 + ABID97_RS21110 0.79 +0.5 4,358,736 + ABID97_RS21110 0.89 +0.4 4,358,989 + ABID97_RS21115 0.25 +0.2 4,358,990 - ABID97_RS21115 0.25 -0.6 4,359,548 + ABID97_RS21120 0.11 -0.8
Or see this region's nucleotide sequence