Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15835 and ABID97_RS15840 are separated by 54 nucleotides ABID97_RS15840 and ABID97_RS15845 are separated by 121 nucleotides ABID97_RS15845 and ABID97_RS15850 are separated by 12 nucleotides
ABID97_RS15835: ABID97_RS15835 - tripartite tricarboxylate transporter substrate binding protein, at 3,280,603 to 3,281,580
_RS15835
ABID97_RS15840: ABID97_RS15840 - aminotransferase class V-fold PLP-dependent enzyme, at 3,281,635 to 3,282,879
_RS15840
ABID97_RS15845: ABID97_RS15845 - GntR family transcriptional regulator, at 3,283,001 to 3,283,696
_RS15845
ABID97_RS15850: ABID97_RS15850 - FAD-linked oxidase C-terminal domain-containing protein, at 3,283,709 to 3,286,786
_RS15850
Position (kb)
3281
3282
3283 Strain fitness (log2 ratio)
-2
-1
0
1 at 3280.715 kb on + strand, within ABID97_RS15835 at 3280.715 kb on + strand, within ABID97_RS15835 at 3280.715 kb on + strand, within ABID97_RS15835 at 3280.716 kb on - strand, within ABID97_RS15835 at 3281.027 kb on + strand, within ABID97_RS15835 at 3281.346 kb on - strand, within ABID97_RS15835 at 3282.078 kb on - strand, within ABID97_RS15840 at 3282.608 kb on + strand, within ABID97_RS15840 at 3282.683 kb on + strand, within ABID97_RS15840 at 3282.935 kb on + strand at 3283.164 kb on + strand, within ABID97_RS15845 at 3283.397 kb on + strand, within ABID97_RS15845 at 3283.467 kb on - strand, within ABID97_RS15845 at 3283.847 kb on + strand at 3283.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 3,280,715 + ABID97_RS15835 0.11 +0.8 3,280,715 + ABID97_RS15835 0.11 -0.8 3,280,715 + ABID97_RS15835 0.11 -0.8 3,280,716 - ABID97_RS15835 0.12 +0.9 3,281,027 + ABID97_RS15835 0.43 -0.9 3,281,346 - ABID97_RS15835 0.76 +1.7 3,282,078 - ABID97_RS15840 0.36 -0.4 3,282,608 + ABID97_RS15840 0.78 -1.7 3,282,683 + ABID97_RS15840 0.84 -1.6 3,282,935 + -0.6 3,283,164 + ABID97_RS15845 0.23 +0.7 3,283,397 + ABID97_RS15845 0.57 -0.3 3,283,467 - ABID97_RS15845 0.67 -0.0 3,283,847 + -2.3 3,283,847 + -0.2
Or see this region's nucleotide sequence