Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09190
Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | NLDM_defined with ATCC Wolfe's mineral mix 20 X |
|---|---|---|---|---|---|
| remove | |||||
| 1,932,563 | + | ABID97_RS09185 | 0.28 | -0.8 | |
| 1,932,563 | + | ABID97_RS09185 | 0.28 | +0.3 | |
| 1,932,563 | + | ABID97_RS09185 | 0.28 | +0.2 | |
| 1,933,245 | - | ABID97_RS09185 | 0.81 | -1.3 | |
| 1,933,427 | + | +0.4 | |||
| 1,933,683 | + | ABID97_RS09190 | 0.21 | +0.3 | |
| 1,933,800 | + | ABID97_RS09190 | 0.34 | -0.3 | |
| 1,933,800 | + | ABID97_RS09190 | 0.34 | +0.8 | |
| 1,933,800 | + | ABID97_RS09190 | 0.34 | -0.0 | |
| 1,933,801 | - | ABID97_RS09190 | 0.34 | +2.2 | |
| 1,933,801 | - | ABID97_RS09190 | 0.34 | +0.6 | |
| 1,934,175 | + | ABID97_RS09190 | 0.76 | +0.4 | |
| 1,934,175 | + | ABID97_RS09190 | 0.76 | +1.9 | |
| 1,934,175 | + | ABID97_RS09190 | 0.76 | +2.3 | |
| 1,934,176 | - | ABID97_RS09190 | 0.76 | -0.6 | |
| 1,934,176 | - | ABID97_RS09190 | 0.76 | -1.2 | |
| 1,934,176 | - | ABID97_RS09190 | 0.76 | -0.7 | |
| 1,935,049 | + | ABID97_RS09195 | 0.53 | +0.4 | |
| 1,935,050 | - | ABID97_RS09195 | 0.53 | -0.2 | |
| 1,935,199 | + | ABID97_RS09195 | 0.66 | +1.3 |
Or see this region's nucleotide sequence