Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS07275 and ABID97_RS07280 are separated by 113 nucleotides ABID97_RS07280 and ABID97_RS07285 are separated by 10 nucleotides ABID97_RS07285 and ABID97_RS07290 are separated by 33 nucleotides
ABID97_RS07275: ABID97_RS07275 - sodium:solute symporter family protein, at 1,543,562 to 1,545,010
_RS07275
ABID97_RS07280: ABID97_RS07280 - FmdB family zinc ribbon protein, at 1,545,124 to 1,545,465
_RS07280
ABID97_RS07285: ABID97_RS07285 - DUF502 domain-containing protein, at 1,545,476 to 1,546,096
_RS07285
ABID97_RS07290: ABID97_RS07290 - aspartate--tRNA ligase, at 1,546,130 to 1,547,935
_RS07290
Position (kb)
1545
1546
1547 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1544.693 kb on + strand, within ABID97_RS07275 at 1544.693 kb on + strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.694 kb on - strand, within ABID97_RS07275 at 1544.723 kb on + strand, within ABID97_RS07275 at 1544.723 kb on + strand at 1544.723 kb on + strand, within ABID97_RS07275 at 1544.724 kb on - strand, within ABID97_RS07275 at 1544.793 kb on - strand, within ABID97_RS07275 at 1545.039 kb on + strand at 1545.039 kb on + strand at 1545.040 kb on - strand at 1545.041 kb on + strand at 1545.617 kb on + strand, within ABID97_RS07285 at 1545.926 kb on + strand, within ABID97_RS07285 at 1545.938 kb on + strand, within ABID97_RS07285 at 1545.971 kb on + strand, within ABID97_RS07285 at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.037 kb on + strand at 1546.094 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 1,544,693 + ABID97_RS07275 0.78 +2.2 1,544,693 + ABID97_RS07275 0.78 +0.9 1,544,694 - ABID97_RS07275 0.78 +1.0 1,544,694 - ABID97_RS07275 0.78 +1.1 1,544,694 - ABID97_RS07275 0.78 +0.6 1,544,694 - ABID97_RS07275 0.78 +1.3 1,544,723 + ABID97_RS07275 0.80 +0.0 1,544,723 + +2.0 1,544,723 + ABID97_RS07275 0.80 +0.0 1,544,724 - ABID97_RS07275 0.80 +0.5 1,544,793 - ABID97_RS07275 0.85 +1.8 1,545,039 + +1.6 1,545,039 + +0.9 1,545,040 - -0.6 1,545,041 + +0.0 1,545,617 + ABID97_RS07285 0.23 -0.2 1,545,926 + ABID97_RS07285 0.72 -1.1 1,545,938 + ABID97_RS07285 0.74 -0.6 1,545,971 + ABID97_RS07285 0.80 -2.2 1,546,037 + -2.2 1,546,037 + -0.6 1,546,037 + +0.1 1,546,037 + -1.3 1,546,037 + -2.7 1,546,094 + +0.4
Or see this region's nucleotide sequence