Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04610 and ABID97_RS04615 are separated by 20 nucleotides ABID97_RS04615 and ABID97_RS04620 are separated by 10 nucleotides ABID97_RS04620 and ABID97_RS04625 are separated by 117 nucleotides
ABID97_RS04610: ABID97_RS04610 - potassium transporter Kup, at 960,662 to 962,533
_RS04610
ABID97_RS04615: ABID97_RS04615 - polysaccharide deacetylase family protein, at 962,554 to 963,477
_RS04615
ABID97_RS04620: ABID97_RS04620 - nuclear transport factor 2 family protein, at 963,488 to 963,925
_RS04620
ABID97_RS04625: ABID97_RS04625 - benzoate/H(+) symporter BenE family transporter, at 964,043 to 965,308
_RS04625
Position (kb) 963
964 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 962.711 kb on + strand, within ABID97_RS04615 at 962.711 kb on + strand, within ABID97_RS04615 at 962.711 kb on + strand, within ABID97_RS04615 at 962.712 kb on - strand, within ABID97_RS04615 at 962.712 kb on - strand, within ABID97_RS04615 at 962.937 kb on - strand, within ABID97_RS04615 at 962.942 kb on + strand, within ABID97_RS04615 at 963.176 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.368 kb on + strand, within ABID97_RS04615 at 963.369 kb on - strand, within ABID97_RS04615 at 963.402 kb on - strand at 963.428 kb on + strand at 963.429 kb on - strand at 963.579 kb on + strand, within ABID97_RS04620 at 963.591 kb on + strand, within ABID97_RS04620 at 963.591 kb on + strand, within ABID97_RS04620 at 963.592 kb on - strand, within ABID97_RS04620 at 963.633 kb on + strand, within ABID97_RS04620 at 963.633 kb on + strand, within ABID97_RS04620 at 963.634 kb on - strand, within ABID97_RS04620 at 963.652 kb on - strand, within ABID97_RS04620 at 963.652 kb on - strand, within ABID97_RS04620 at 963.723 kb on + strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.724 kb on - strand, within ABID97_RS04620 at 963.810 kb on + strand, within ABID97_RS04620 at 963.810 kb on + strand, within ABID97_RS04620 at 963.811 kb on - strand, within ABID97_RS04620 at 964.308 kb on - strand, within ABID97_RS04625 at 964.308 kb on - strand, within ABID97_RS04625 at 964.308 kb on - strand, within ABID97_RS04625 at 964.517 kb on + strand, within ABID97_RS04625 at 964.518 kb on - strand, within ABID97_RS04625 at 964.518 kb on - strand, within ABID97_RS04625 at 964.518 kb on - strand, within ABID97_RS04625 at 964.547 kb on + strand, within ABID97_RS04625 at 964.760 kb on + strand, within ABID97_RS04625
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 962,711 + ABID97_RS04615 0.17 +0.5 962,711 + ABID97_RS04615 0.17 -0.5 962,711 + ABID97_RS04615 0.17 -0.5 962,712 - ABID97_RS04615 0.17 -0.4 962,712 - ABID97_RS04615 0.17 -0.5 962,937 - ABID97_RS04615 0.41 -0.2 962,942 + ABID97_RS04615 0.42 -0.9 963,176 + ABID97_RS04615 0.67 -0.7 963,368 + ABID97_RS04615 0.88 -1.3 963,368 + ABID97_RS04615 0.88 -2.0 963,368 + ABID97_RS04615 0.88 +0.0 963,368 + ABID97_RS04615 0.88 -0.1 963,369 - ABID97_RS04615 0.88 +1.3 963,402 - +0.1 963,428 + +0.2 963,429 - -1.2 963,579 + ABID97_RS04620 0.21 +0.8 963,591 + ABID97_RS04620 0.24 -0.3 963,591 + ABID97_RS04620 0.24 +0.9 963,592 - ABID97_RS04620 0.24 -1.3 963,633 + ABID97_RS04620 0.33 -1.2 963,633 + ABID97_RS04620 0.33 -0.2 963,634 - ABID97_RS04620 0.33 +2.0 963,652 - ABID97_RS04620 0.37 -0.3 963,652 - ABID97_RS04620 0.37 -0.8 963,723 + ABID97_RS04620 0.54 -1.1 963,724 - ABID97_RS04620 0.54 -0.6 963,724 - ABID97_RS04620 0.54 -0.4 963,724 - ABID97_RS04620 0.54 -3.3 963,810 + ABID97_RS04620 0.74 +0.9 963,810 + ABID97_RS04620 0.74 +0.3 963,811 - ABID97_RS04620 0.74 -0.3 964,308 - ABID97_RS04625 0.21 -2.1 964,308 - ABID97_RS04625 0.21 +0.4 964,308 - ABID97_RS04625 0.21 -0.6 964,517 + ABID97_RS04625 0.37 -0.7 964,518 - ABID97_RS04625 0.38 -0.0 964,518 - ABID97_RS04625 0.38 -2.5 964,518 - ABID97_RS04625 0.38 +0.9 964,547 + ABID97_RS04625 0.40 +2.7 964,760 + ABID97_RS04625 0.57 -0.2
Or see this region's nucleotide sequence