Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03040 and ABID97_RS03045 are separated by 143 nucleotides ABID97_RS03045 and ABID97_RS03050 are separated by 16 nucleotides ABID97_RS03050 and ABID97_RS03055 are separated by 28 nucleotides
ABID97_RS03040: ABID97_RS03040 - 3-keto-5-aminohexanoate cleavage protein, at 616,710 to 617,633
_RS03040
ABID97_RS03045: ABID97_RS03045 - Crp/Fnr family transcriptional regulator, at 617,777 to 618,484
_RS03045
ABID97_RS03050: ABID97_RS03050 - 4-oxalocrotonate tautomerase family protein, at 618,501 to 618,725
_RS03050
ABID97_RS03055: ABID97_RS03055 - SDR family oxidoreductase, at 618,754 to 619,500
_RS03055
Position (kb) 617
618
619 Strain fitness (log2 ratio) -1
0
1
2
3 at 616.870 kb on + strand, within ABID97_RS03040 at 616.871 kb on - strand, within ABID97_RS03040 at 616.871 kb on - strand, within ABID97_RS03040 at 617.074 kb on + strand, within ABID97_RS03040 at 617.074 kb on + strand, within ABID97_RS03040 at 617.074 kb on + strand, within ABID97_RS03040 at 617.075 kb on - strand, within ABID97_RS03040 at 617.075 kb on - strand, within ABID97_RS03040 at 617.075 kb on - strand, within ABID97_RS03040 at 617.674 kb on + strand at 617.675 kb on - strand at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.230 kb on + strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.231 kb on - strand, within ABID97_RS03045 at 618.432 kb on - strand at 618.432 kb on - strand at 618.432 kb on - strand at 618.827 kb on + strand at 618.827 kb on + strand at 618.828 kb on - strand at 618.914 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.194 kb on - strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 616,870 + ABID97_RS03040 0.17 +1.6 616,871 - ABID97_RS03040 0.17 +0.4 616,871 - ABID97_RS03040 0.17 -0.5 617,074 + ABID97_RS03040 0.39 +0.6 617,074 + ABID97_RS03040 0.39 +1.0 617,074 + ABID97_RS03040 0.39 -0.2 617,075 - ABID97_RS03040 0.40 -0.0 617,075 - ABID97_RS03040 0.40 -0.7 617,075 - ABID97_RS03040 0.40 +1.8 617,674 + -0.7 617,675 - +0.8 618,230 + ABID97_RS03045 0.64 +1.0 618,230 + ABID97_RS03045 0.64 +1.6 618,230 + ABID97_RS03045 0.64 +3.4 618,230 + ABID97_RS03045 0.64 -0.6 618,230 + ABID97_RS03045 0.64 -0.2 618,231 - ABID97_RS03045 0.64 -1.1 618,231 - ABID97_RS03045 0.64 +0.4 618,231 - ABID97_RS03045 0.64 +1.0 618,432 - -0.7 618,432 - -0.8 618,432 - +0.3 618,827 + -0.6 618,827 + +1.0 618,828 - +1.1 618,914 + ABID97_RS03055 0.21 +0.8 619,139 + ABID97_RS03055 0.52 +0.6 619,139 + ABID97_RS03055 0.52 +1.8 619,194 - ABID97_RS03055 0.59 +0.3 619,418 + ABID97_RS03055 0.89 -0.7 619,418 + ABID97_RS03055 0.89 +0.4 619,419 - ABID97_RS03055 0.89 -1.1 619,419 - ABID97_RS03055 0.89 -0.7
Or see this region's nucleotide sequence