Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01420 and ABID97_RS01425 are separated by 116 nucleotides ABID97_RS01425 and ABID97_RS01430 are separated by 1 nucleotides ABID97_RS01430 and ABID97_RS01435 overlap by 4 nucleotides
ABID97_RS01420: ABID97_RS01420 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 286,214 to 287,482
_RS01420
ABID97_RS01425: ABID97_RS01425 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 287,599 to 289,986
_RS01425
ABID97_RS01430: ABID97_RS01430 - MarR family transcriptional regulator, at 289,988 to 290,464
_RS01430
ABID97_RS01435: ABID97_RS01435 - enoyl-CoA hydratase family protein, at 290,461 to 291,315
_RS01435
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 286.635 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.713 kb on + strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.714 kb on - strand, within ABID97_RS01420 at 286.911 kb on + strand, within ABID97_RS01420 at 287.059 kb on - strand, within ABID97_RS01420 at 287.059 kb on - strand, within ABID97_RS01420 at 287.070 kb on + strand, within ABID97_RS01420 at 287.070 kb on + strand, within ABID97_RS01420 at 287.070 kb on + strand, within ABID97_RS01420 at 287.101 kb on - strand, within ABID97_RS01420 at 287.286 kb on - strand, within ABID97_RS01420 at 287.301 kb on + strand, within ABID97_RS01420 at 287.302 kb on - strand, within ABID97_RS01420 at 287.302 kb on - strand, within ABID97_RS01420 at 287.302 kb on - strand, within ABID97_RS01420 at 287.468 kb on + strand at 287.496 kb on + strand at 287.497 kb on - strand at 287.552 kb on + strand at 287.553 kb on - strand at 287.553 kb on - strand at 287.555 kb on + strand at 287.556 kb on - strand at 287.556 kb on - strand at 287.556 kb on - strand at 288.034 kb on + strand, within ABID97_RS01425 at 288.035 kb on - strand, within ABID97_RS01425 at 288.275 kb on + strand, within ABID97_RS01425 at 288.350 kb on - strand, within ABID97_RS01425 at 288.350 kb on - strand, within ABID97_RS01425 at 288.613 kb on + strand, within ABID97_RS01425 at 288.727 kb on + strand, within ABID97_RS01425 at 288.803 kb on - strand, within ABID97_RS01425 at 288.910 kb on + strand, within ABID97_RS01425 at 288.911 kb on - strand, within ABID97_RS01425 at 288.911 kb on - strand, within ABID97_RS01425 at 288.911 kb on - strand, within ABID97_RS01425 at 289.051 kb on + strand, within ABID97_RS01425 at 289.052 kb on - strand, within ABID97_RS01425 at 289.052 kb on - strand, within ABID97_RS01425 at 289.052 kb on - strand, within ABID97_RS01425 at 289.372 kb on + strand, within ABID97_RS01425 at 289.654 kb on + strand, within ABID97_RS01425 at 289.666 kb on + strand, within ABID97_RS01425 at 289.667 kb on - strand, within ABID97_RS01425 at 289.667 kb on - strand, within ABID97_RS01425 at 289.879 kb on + strand at 290.471 kb on - strand at 290.471 kb on - strand at 290.521 kb on + strand at 290.617 kb on + strand, within ABID97_RS01435 at 290.618 kb on - strand, within ABID97_RS01435 at 290.618 kb on - strand, within ABID97_RS01435 at 290.653 kb on + strand, within ABID97_RS01435 at 290.940 kb on - strand, within ABID97_RS01435 at 290.940 kb on - strand, within ABID97_RS01435
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 286,635 + ABID97_RS01420 0.33 -1.0 286,713 + ABID97_RS01420 0.39 +0.9 286,713 + ABID97_RS01420 0.39 -2.2 286,713 + ABID97_RS01420 0.39 -1.0 286,713 + ABID97_RS01420 0.39 -0.8 286,714 - ABID97_RS01420 0.39 -0.3 286,714 - ABID97_RS01420 0.39 -0.0 286,714 - ABID97_RS01420 0.39 +0.2 286,911 + ABID97_RS01420 0.55 +0.3 287,059 - ABID97_RS01420 0.67 +0.9 287,059 - ABID97_RS01420 0.67 +1.6 287,070 + ABID97_RS01420 0.67 +0.4 287,070 + ABID97_RS01420 0.67 -0.3 287,070 + ABID97_RS01420 0.67 +1.5 287,101 - ABID97_RS01420 0.70 -0.0 287,286 - ABID97_RS01420 0.84 +0.2 287,301 + ABID97_RS01420 0.86 +4.0 287,302 - ABID97_RS01420 0.86 +0.3 287,302 - ABID97_RS01420 0.86 +1.7 287,302 - ABID97_RS01420 0.86 +0.9 287,468 + +0.3 287,496 + -0.2 287,497 - -0.2 287,552 + -0.6 287,553 - -1.6 287,553 - -0.6 287,555 + -1.6 287,556 - -0.7 287,556 - -0.7 287,556 - +0.9 288,034 + ABID97_RS01425 0.18 -1.0 288,035 - ABID97_RS01425 0.18 -1.9 288,275 + ABID97_RS01425 0.28 +0.2 288,350 - ABID97_RS01425 0.31 -0.3 288,350 - ABID97_RS01425 0.31 -1.2 288,613 + ABID97_RS01425 0.42 -0.1 288,727 + ABID97_RS01425 0.47 -1.3 288,803 - ABID97_RS01425 0.50 +0.4 288,910 + ABID97_RS01425 0.55 -2.8 288,911 - ABID97_RS01425 0.55 -0.8 288,911 - ABID97_RS01425 0.55 +0.8 288,911 - ABID97_RS01425 0.55 -1.4 289,051 + ABID97_RS01425 0.61 +0.4 289,052 - ABID97_RS01425 0.61 -0.9 289,052 - ABID97_RS01425 0.61 -0.8 289,052 - ABID97_RS01425 0.61 +1.2 289,372 + ABID97_RS01425 0.74 -0.9 289,654 + ABID97_RS01425 0.86 +3.7 289,666 + ABID97_RS01425 0.87 -0.6 289,667 - ABID97_RS01425 0.87 -0.4 289,667 - ABID97_RS01425 0.87 -0.6 289,879 + -2.8 290,471 - +3.5 290,471 - -0.2 290,521 + -0.2 290,617 + ABID97_RS01435 0.18 -0.2 290,618 - ABID97_RS01435 0.18 -1.7 290,618 - ABID97_RS01435 0.18 +1.2 290,653 + ABID97_RS01435 0.22 +0.0 290,940 - ABID97_RS01435 0.56 +1.9 290,940 - ABID97_RS01435 0.56 +0.7
Or see this region's nucleotide sequence