Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00965 and ABID97_RS00970 overlap by 4 nucleotides ABID97_RS00970 and ABID97_RS00975 are separated by 121 nucleotides ABID97_RS00975 and ABID97_RS00980 are separated by 10 nucleotides ABID97_RS00980 and ABID97_RS00985 are separated by 146 nucleotides
ABID97_RS00965: ABID97_RS00965 - ATP-binding protein, at 194,660 to 196,048
_RS00965
ABID97_RS00970: ABID97_RS00970 - response regulator transcription factor, at 196,045 to 196,701
_RS00970
ABID97_RS00975: ABID97_RS00975 - winged helix DNA-binding domain-containing protein, at 196,823 to 197,926
_RS00975
ABID97_RS00980: ABID97_RS00980 - pseudouridine synthase, at 197,937 to 198,761
_RS00980
ABID97_RS00985: ABID97_RS00985 - glycosyltransferase, at 198,908 to 200,047
_RS00985
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1
2 at 195.924 kb on + strand at 196.166 kb on + strand, within ABID97_RS00970 at 196.167 kb on - strand, within ABID97_RS00970 at 196.167 kb on - strand, within ABID97_RS00970 at 196.568 kb on + strand, within ABID97_RS00970 at 196.569 kb on - strand, within ABID97_RS00970 at 196.569 kb on - strand, within ABID97_RS00970 at 196.727 kb on + strand at 196.728 kb on - strand at 196.787 kb on - strand at 196.789 kb on + strand at 196.790 kb on - strand at 197.787 kb on + strand, within ABID97_RS00975 at 197.788 kb on - strand, within ABID97_RS00975 at 197.788 kb on - strand, within ABID97_RS00975 at 197.788 kb on - strand, within ABID97_RS00975 at 198.284 kb on - strand, within ABID97_RS00980 at 198.530 kb on - strand, within ABID97_RS00980
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 195,924 + +0.4 196,166 + ABID97_RS00970 0.18 -0.1 196,167 - ABID97_RS00970 0.19 -1.5 196,167 - ABID97_RS00970 0.19 +1.2 196,568 + ABID97_RS00970 0.80 -1.1 196,569 - ABID97_RS00970 0.80 -1.1 196,569 - ABID97_RS00970 0.80 +0.9 196,727 + -0.2 196,728 - -1.2 196,787 - -1.3 196,789 + +1.2 196,790 - +0.6 197,787 + ABID97_RS00975 0.87 +0.0 197,788 - ABID97_RS00975 0.87 -0.2 197,788 - ABID97_RS00975 0.87 -0.5 197,788 - ABID97_RS00975 0.87 +2.1 198,284 - ABID97_RS00980 0.42 +0.1 198,530 - ABID97_RS00980 0.72 +0.3
Or see this region's nucleotide sequence