Experiment: NLDM_defined with ATCC Wolfe's mineral mix 20 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00925 and ABID97_RS00930 are separated by 91 nucleotides ABID97_RS00930 and ABID97_RS00935 are separated by 196 nucleotides ABID97_RS00935 and ABID97_RS00940 are separated by 33 nucleotides
ABID97_RS00925: ABID97_RS00925 - MarR family transcriptional regulator, at 186,578 to 187,030
_RS00925
ABID97_RS00930: ABID97_RS00930 - organic hydroperoxide resistance protein, at 187,122 to 187,547
_RS00930
ABID97_RS00935: ABID97_RS00935 - DUF2855 family protein, at 187,744 to 188,859
_RS00935
ABID97_RS00940: ABID97_RS00940 - serine/threonine protein kinase, at 188,893 to 189,930
_RS00940
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.833 kb on + strand, within ABID97_RS00925 at 186.834 kb on - strand, within ABID97_RS00925 at 187.149 kb on + strand at 187.149 kb on + strand at 187.150 kb on - strand at 187.285 kb on - strand, within ABID97_RS00930 at 187.405 kb on - strand, within ABID97_RS00930 at 187.498 kb on - strand, within ABID97_RS00930 at 187.909 kb on + strand, within ABID97_RS00935 at 187.909 kb on + strand, within ABID97_RS00935 at 187.910 kb on - strand, within ABID97_RS00935 at 188.021 kb on - strand, within ABID97_RS00935 at 188.021 kb on - strand, within ABID97_RS00935 at 188.125 kb on + strand, within ABID97_RS00935 at 188.126 kb on - strand, within ABID97_RS00935 at 188.134 kb on + strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.135 kb on - strand, within ABID97_RS00935 at 188.161 kb on + strand, within ABID97_RS00935 at 188.161 kb on + strand, within ABID97_RS00935 at 188.162 kb on - strand, within ABID97_RS00935 at 188.399 kb on - strand, within ABID97_RS00935 at 188.416 kb on + strand, within ABID97_RS00935 at 188.458 kb on + strand, within ABID97_RS00935 at 188.837 kb on - strand at 188.877 kb on + strand at 188.933 kb on - strand at 189.035 kb on - strand, within ABID97_RS00940 at 189.035 kb on - strand, within ABID97_RS00940 at 189.035 kb on - strand, within ABID97_RS00940 at 189.419 kb on + strand at 189.419 kb on + strand, within ABID97_RS00940 at 189.420 kb on - strand, within ABID97_RS00940 at 189.784 kb on + strand, within ABID97_RS00940 at 189.785 kb on - strand, within ABID97_RS00940 at 189.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 20 X remove 186,833 + ABID97_RS00925 0.56 +0.5 186,834 - ABID97_RS00925 0.57 +0.7 187,149 + -0.6 187,149 + -1.3 187,150 - -0.2 187,285 - ABID97_RS00930 0.38 +0.8 187,405 - ABID97_RS00930 0.66 +0.1 187,498 - ABID97_RS00930 0.88 -0.7 187,909 + ABID97_RS00935 0.15 -0.7 187,909 + ABID97_RS00935 0.15 -1.4 187,910 - ABID97_RS00935 0.15 -0.0 188,021 - ABID97_RS00935 0.25 -1.0 188,021 - ABID97_RS00935 0.25 +1.5 188,125 + ABID97_RS00935 0.34 -0.0 188,126 - ABID97_RS00935 0.34 -0.1 188,134 + ABID97_RS00935 0.35 +3.0 188,135 - ABID97_RS00935 0.35 +0.6 188,135 - ABID97_RS00935 0.35 +1.7 188,135 - ABID97_RS00935 0.35 -1.0 188,161 + ABID97_RS00935 0.37 -1.9 188,161 + ABID97_RS00935 0.37 -0.7 188,162 - ABID97_RS00935 0.37 +0.6 188,399 - ABID97_RS00935 0.59 -0.1 188,416 + ABID97_RS00935 0.60 +1.6 188,458 + ABID97_RS00935 0.64 +0.6 188,837 - +0.7 188,877 + -0.1 188,933 - -0.1 189,035 - ABID97_RS00940 0.14 -1.4 189,035 - ABID97_RS00940 0.14 -0.0 189,035 - ABID97_RS00940 0.14 -1.4 189,419 + -1.2 189,419 + ABID97_RS00940 0.51 -2.8 189,420 - ABID97_RS00940 0.51 +1.7 189,784 + ABID97_RS00940 0.86 +0.0 189,785 - ABID97_RS00940 0.86 -0.9 189,859 + -0.1
Or see this region's nucleotide sequence