Experiment: NLDM_defined with ATCC Wolfe's mineral mix 10 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23600 and ABID97_RS23605 are separated by 14 nucleotides ABID97_RS23605 and ABID97_RS23610 are separated by 50 nucleotides
ABID97_RS23600: ABID97_RS23600 - hypothetical protein, at 4,883,769 to 4,884,275
_RS23600
ABID97_RS23605: ABID97_RS23605 - helix-turn-helix transcriptional regulator, at 4,884,290 to 4,884,619
_RS23605
ABID97_RS23610: ABID97_RS23610 - HlyD family type I secretion periplasmic adaptor subunit, at 4,884,670 to 4,886,007
_RS23610
Position (kb) 4884
4885 Strain fitness (log2 ratio) -2
-1
0
1 at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.354 kb on - strand at 4883.384 kb on - strand at 4883.384 kb on - strand at 4883.409 kb on + strand at 4883.409 kb on + strand at 4883.410 kb on - strand at 4883.506 kb on + strand at 4883.506 kb on + strand at 4883.646 kb on - strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.716 kb on + strand at 4883.717 kb on - strand at 4883.717 kb on - strand at 4883.717 kb on - strand at 4883.717 kb on - strand at 4883.893 kb on - strand, within ABID97_RS23600 at 4884.279 kb on + strand at 4884.280 kb on - strand at 4884.315 kb on - strand at 4884.320 kb on + strand at 4884.355 kb on + strand, within ABID97_RS23605 at 4884.355 kb on + strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.356 kb on - strand, within ABID97_RS23605 at 4884.476 kb on + strand, within ABID97_RS23605 at 4884.476 kb on + strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.477 kb on - strand, within ABID97_RS23605 at 4884.478 kb on + strand, within ABID97_RS23605 at 4884.478 kb on + strand, within ABID97_RS23605 at 4884.839 kb on + strand, within ABID97_RS23610 at 4884.842 kb on + strand, within ABID97_RS23610 at 4884.842 kb on + strand, within ABID97_RS23610 at 4884.842 kb on + strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.843 kb on - strand, within ABID97_RS23610 at 4884.924 kb on - strand, within ABID97_RS23610 at 4885.079 kb on + strand, within ABID97_RS23610 at 4885.079 kb on + strand, within ABID97_RS23610
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 10 X remove 4,883,354 - +0.7 4,883,354 - -0.2 4,883,354 - +1.2 4,883,354 - -1.8 4,883,354 - +0.2 4,883,354 - +0.3 4,883,354 - +0.2 4,883,384 - +0.1 4,883,384 - -0.7 4,883,409 + +1.0 4,883,409 + +0.4 4,883,410 - +0.5 4,883,506 + -0.2 4,883,506 + -0.4 4,883,646 - +0.5 4,883,716 + -0.5 4,883,716 + +0.0 4,883,716 + +0.2 4,883,716 + -0.1 4,883,716 + -0.0 4,883,716 + -1.7 4,883,717 - -0.8 4,883,717 - +0.5 4,883,717 - -0.2 4,883,717 - -0.6 4,883,893 - ABID97_RS23600 0.24 +0.1 4,884,279 + -2.4 4,884,280 - -0.4 4,884,315 - -0.1 4,884,320 + -0.1 4,884,355 + ABID97_RS23605 0.20 +0.1 4,884,355 + ABID97_RS23605 0.20 +1.2 4,884,356 - ABID97_RS23605 0.20 +0.7 4,884,356 - ABID97_RS23605 0.20 -0.1 4,884,356 - ABID97_RS23605 0.20 +0.1 4,884,356 - ABID97_RS23605 0.20 +0.3 4,884,476 + ABID97_RS23605 0.56 +0.0 4,884,476 + ABID97_RS23605 0.56 +0.3 4,884,477 - ABID97_RS23605 0.57 -0.7 4,884,477 - ABID97_RS23605 0.57 -0.0 4,884,477 - ABID97_RS23605 0.57 -0.2 4,884,477 - ABID97_RS23605 0.57 -0.1 4,884,477 - ABID97_RS23605 0.57 +0.0 4,884,478 + ABID97_RS23605 0.57 +0.3 4,884,478 + ABID97_RS23605 0.57 -0.3 4,884,839 + ABID97_RS23610 0.13 -0.1 4,884,842 + ABID97_RS23610 0.13 -0.1 4,884,842 + ABID97_RS23610 0.13 +0.2 4,884,842 + ABID97_RS23610 0.13 -0.8 4,884,843 - ABID97_RS23610 0.13 +1.2 4,884,843 - ABID97_RS23610 0.13 -0.3 4,884,843 - ABID97_RS23610 0.13 +0.1 4,884,843 - ABID97_RS23610 0.13 +0.6 4,884,924 - ABID97_RS23610 0.19 +0.3 4,885,079 + ABID97_RS23610 0.31 -0.0 4,885,079 + ABID97_RS23610 0.31 -0.1
Or see this region's nucleotide sequence