Experiment: NLDM_defined with ATCC Wolfe's mineral mix 10 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03670 and ABID97_RS03675 are separated by 12 nucleotides ABID97_RS03675 and ABID97_RS03680 are separated by 75 nucleotides ABID97_RS03680 and ABID97_RS03685 are separated by 170 nucleotides
ABID97_RS03670: ABID97_RS03670 - glutathione peroxidase, at 755,567 to 756,055
_RS03670
ABID97_RS03675: ABID97_RS03675 - DMT family transporter, at 756,068 to 756,958
_RS03675
ABID97_RS03680: ABID97_RS03680 - lysophospholipid transporter LplT, at 757,034 to 758,338
_RS03680
ABID97_RS03685: ABID97_RS03685 - alanine racemase, at 758,509 to 759,609
_RS03685
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 756.042 kb on + strand at 756.043 kb on - strand at 756.043 kb on - strand at 756.043 kb on - strand at 756.065 kb on - strand at 756.277 kb on - strand, within ABID97_RS03675 at 756.681 kb on + strand, within ABID97_RS03675 at 756.682 kb on - strand, within ABID97_RS03675 at 756.846 kb on + strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 756.847 kb on - strand, within ABID97_RS03675 at 757.090 kb on - strand at 757.207 kb on - strand, within ABID97_RS03680 at 757.542 kb on + strand, within ABID97_RS03680 at 757.578 kb on + strand, within ABID97_RS03680 at 757.578 kb on + strand, within ABID97_RS03680 at 757.578 kb on + strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.579 kb on - strand, within ABID97_RS03680 at 757.792 kb on - strand, within ABID97_RS03680 at 758.009 kb on + strand, within ABID97_RS03680 at 758.010 kb on + strand, within ABID97_RS03680 at 758.010 kb on + strand, within ABID97_RS03680 at 758.010 kb on + strand, within ABID97_RS03680 at 758.011 kb on - strand, within ABID97_RS03680 at 758.025 kb on + strand, within ABID97_RS03680 at 758.187 kb on + strand, within ABID97_RS03680 at 758.322 kb on + strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.413 kb on + strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.414 kb on - strand at 758.477 kb on + strand at 758.477 kb on + strand at 758.478 kb on - strand at 758.478 kb on - strand at 758.478 kb on - strand at 758.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 10 X remove 756,042 + +0.3 756,043 - +0.2 756,043 - -0.4 756,043 - -0.5 756,065 - -0.5 756,277 - ABID97_RS03675 0.23 -0.5 756,681 + ABID97_RS03675 0.69 +1.6 756,682 - ABID97_RS03675 0.69 -0.5 756,846 + ABID97_RS03675 0.87 -0.0 756,847 - ABID97_RS03675 0.87 +0.0 756,847 - ABID97_RS03675 0.87 +0.1 756,847 - ABID97_RS03675 0.87 +0.1 757,090 - -1.6 757,207 - ABID97_RS03680 0.13 -3.0 757,542 + ABID97_RS03680 0.39 -1.9 757,578 + ABID97_RS03680 0.42 -1.8 757,578 + ABID97_RS03680 0.42 -1.2 757,578 + ABID97_RS03680 0.42 -0.7 757,579 - ABID97_RS03680 0.42 -2.8 757,579 - ABID97_RS03680 0.42 -1.3 757,579 - ABID97_RS03680 0.42 -2.5 757,579 - ABID97_RS03680 0.42 -1.7 757,792 - ABID97_RS03680 0.58 -3.5 758,009 + ABID97_RS03680 0.75 -2.7 758,010 + ABID97_RS03680 0.75 -2.9 758,010 + ABID97_RS03680 0.75 -3.2 758,010 + ABID97_RS03680 0.75 -2.4 758,011 - ABID97_RS03680 0.75 -1.9 758,025 + ABID97_RS03680 0.76 -2.1 758,187 + ABID97_RS03680 0.88 -0.2 758,322 + -2.2 758,413 + -0.1 758,413 + -0.7 758,413 + -0.5 758,413 + +0.0 758,413 + -0.1 758,414 - +0.6 758,414 - +0.1 758,414 - +0.3 758,414 - +0.4 758,414 - -0.1 758,414 - +0.3 758,414 - +1.7 758,477 + +0.5 758,477 + +0.3 758,478 - +0.2 758,478 - -0.2 758,478 - +0.5 758,478 - -0.6
Or see this region's nucleotide sequence