Experiment: NLDM_defined with ATCC Wolfe's mineral mix 10 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26140 and ABID97_RS26145 are separated by 110 nucleotides ABID97_RS26145 and ABID97_RS26150 are separated by 16 nucleotides ABID97_RS26150 and ABID97_RS26155 are separated by 99 nucleotides
ABID97_RS26140: ABID97_RS26140 - acetamidase/formamidase family protein, at 153,365 to 155,773
_RS26140
ABID97_RS26145: ABID97_RS26145 - RidA family protein, at 155,884 to 156,282
_RS26145
ABID97_RS26150: ABID97_RS26150 - TetR/AcrR family transcriptional regulator, at 156,299 to 156,952
_RS26150
ABID97_RS26155: ABID97_RS26155 - NADH:flavin oxidoreductase/NADH oxidase, at 157,052 to 158,221
_RS26155
Position (kb) 155
156
157 Strain fitness (log2 ratio) -1
0
1
2
3 at 155.134 kb on - strand, within ABID97_RS26140 at 156.122 kb on - strand, within ABID97_RS26145 at 156.122 kb on - strand, within ABID97_RS26145 at 156.166 kb on + strand, within ABID97_RS26145 at 156.167 kb on - strand, within ABID97_RS26145 at 156.667 kb on - strand, within ABID97_RS26150 at 156.711 kb on + strand, within ABID97_RS26150 at 156.712 kb on - strand, within ABID97_RS26150 at 156.932 kb on + strand at 157.130 kb on + strand at 157.131 kb on - strand at 157.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 10 X remove 155,134 - ABID97_RS26140 0.73 -0.3 156,122 - ABID97_RS26145 0.60 +2.9 156,122 - ABID97_RS26145 0.60 -1.3 156,166 + ABID97_RS26145 0.71 -0.3 156,167 - ABID97_RS26145 0.71 -1.7 156,667 - ABID97_RS26150 0.56 +0.2 156,711 + ABID97_RS26150 0.63 -0.1 156,712 - ABID97_RS26150 0.63 -1.3 156,932 + -0.3 157,130 + +0.3 157,131 - +1.1 157,161 - -0.1
Or see this region's nucleotide sequence