Experiment: NLDM_defined with ATCC Wolfe's mineral mix 10 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25625 and ABID97_RS25630 are separated by 10 nucleotides ABID97_RS25630 and ABID97_RS25635 are separated by 79 nucleotides ABID97_RS25635 and ABID97_RS25640 are separated by 45 nucleotides
ABID97_RS25625: ABID97_RS25625 - tetratricopeptide repeat protein, at 44,075 to 45,268
_RS25625
ABID97_RS25630: ABID97_RS25630 - HupE/UreJ family protein, at 45,279 to 46,430
_RS25630
ABID97_RS25635: ABID97_RS25635 - nickel-responsive transcriptional regulator NikR, at 46,510 to 46,992
_RS25635
ABID97_RS25640: ABID97_RS25640 - GntR family transcriptional regulator, at 47,038 to 47,733
_RS25640
Position (kb) 45
46
47 Strain fitness (log2 ratio) -1
0
1 at 44.841 kb on - strand, within ABID97_RS25625 at 44.865 kb on - strand, within ABID97_RS25625 at 45.378 kb on + strand at 45.378 kb on + strand at 45.528 kb on + strand, within ABID97_RS25630 at 45.529 kb on - strand, within ABID97_RS25630 at 46.490 kb on + strand at 46.491 kb on - strand at 46.696 kb on + strand, within ABID97_RS25635 at 46.799 kb on + strand, within ABID97_RS25635 at 47.035 kb on + strand at 47.035 kb on + strand at 47.297 kb on + strand, within ABID97_RS25640 at 47.297 kb on + strand, within ABID97_RS25640 at 47.297 kb on + strand, within ABID97_RS25640 at 47.298 kb on - strand, within ABID97_RS25640 at 47.298 kb on - strand, within ABID97_RS25640
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 10 X remove 44,841 - ABID97_RS25625 0.64 +0.9 44,865 - ABID97_RS25625 0.66 -0.0 45,378 + -0.8 45,378 + -0.3 45,528 + ABID97_RS25630 0.22 +1.6 45,529 - ABID97_RS25630 0.22 +1.3 46,490 + +1.1 46,491 - -0.2 46,696 + ABID97_RS25635 0.39 -0.1 46,799 + ABID97_RS25635 0.60 +0.2 47,035 + +0.0 47,035 + +1.7 47,297 + ABID97_RS25640 0.37 +0.3 47,297 + ABID97_RS25640 0.37 +0.1 47,297 + ABID97_RS25640 0.37 +0.6 47,298 - ABID97_RS25640 0.37 +1.0 47,298 - ABID97_RS25640 0.37 +0.0
Or see this region's nucleotide sequence