Strain Fitness in Variovorax sp. OAS795 around ABID97_RS03225

Experiment: NLDM_defined with ATCC Wolfe's mineral mix 10 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS03215 and ABID97_RS03220 overlap by 4 nucleotidesABID97_RS03220 and ABID97_RS03225 are separated by 99 nucleotidesABID97_RS03225 and ABID97_RS03230 are separated by 16 nucleotidesABID97_RS03230 and ABID97_RS03235 overlap by 55 nucleotides ABID97_RS03215: ABID97_RS03215 - VOC family protein, at 652,314 to 652,754 _RS03215 ABID97_RS03220: ABID97_RS03220 - CopD family protein, at 652,751 to 653,209 _RS03220 ABID97_RS03225: ABID97_RS03225 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 653,309 to 654,139 _RS03225 ABID97_RS03230: ABID97_RS03230 - uracil-DNA glycosylase family protein, at 654,156 to 654,785 _RS03230 ABID97_RS03235: ABID97_RS03235 - amidohydrolase, at 654,731 to 656,404 _RS03235 Position (kb) 653 654 655Strain fitness (log2 ratio) -2 -1 0 1at 652.407 kb on + strand, within ABID97_RS03215at 652.407 kb on + strand, within ABID97_RS03215at 652.408 kb on - strand, within ABID97_RS03215at 652.692 kb on + strand, within ABID97_RS03215at 652.692 kb on + strand, within ABID97_RS03215at 652.693 kb on - strand, within ABID97_RS03215at 652.752 kb on + strandat 652.753 kb on - strandat 652.757 kb on - strandat 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.911 kb on + strand, within ABID97_RS03220at 652.912 kb on - strand, within ABID97_RS03220at 652.912 kb on - strand, within ABID97_RS03220at 652.912 kb on - strand, within ABID97_RS03220at 652.912 kb on - strand, within ABID97_RS03220at 652.912 kb on - strand, within ABID97_RS03220at 652.912 kb on - strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.917 kb on + strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 652.918 kb on - strand, within ABID97_RS03220at 653.828 kb on + strand, within ABID97_RS03225at 653.855 kb on + strand, within ABID97_RS03225at 653.856 kb on - strand, within ABID97_RS03225at 653.856 kb on - strand, within ABID97_RS03225at 654.138 kb on - strandat 654.138 kb on - strandat 654.369 kb on + strand, within ABID97_RS03230at 654.370 kb on - strand, within ABID97_RS03230at 654.783 kb on + strandat 654.951 kb on + strand, within ABID97_RS03235at 654.952 kb on - strand, within ABID97_RS03235at 654.952 kb on - strand, within ABID97_RS03235at 655.059 kb on + strand, within ABID97_RS03235at 655.059 kb on + strand, within ABID97_RS03235at 655.059 kb on + strand, within ABID97_RS03235at 655.059 kb on + strand, within ABID97_RS03235at 655.060 kb on - strand, within ABID97_RS03235at 655.060 kb on - strand, within ABID97_RS03235at 655.060 kb on - strand, within ABID97_RS03235at 655.060 kb on - strand, within ABID97_RS03235

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with ATCC Wolfe's mineral mix 10 X
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652,407 + ABID97_RS03215 0.21 -0.1
652,407 + ABID97_RS03215 0.21 -0.6
652,408 - ABID97_RS03215 0.21 -0.9
652,692 + ABID97_RS03215 0.86 +1.0
652,692 + ABID97_RS03215 0.86 +0.7
652,693 - ABID97_RS03215 0.86 -0.3
652,752 + -0.1
652,753 - +0.1
652,757 - -0.2
652,911 + ABID97_RS03220 0.35 -0.1
652,911 + ABID97_RS03220 0.35 +0.2
652,911 + ABID97_RS03220 0.35 +0.3
652,911 + ABID97_RS03220 0.35 -0.0
652,911 + ABID97_RS03220 0.35 -0.5
652,911 + ABID97_RS03220 0.35 -0.6
652,911 + ABID97_RS03220 0.35 -0.5
652,911 + ABID97_RS03220 0.35 -0.6
652,911 + ABID97_RS03220 0.35 +0.9
652,911 + ABID97_RS03220 0.35 -0.6
652,912 - ABID97_RS03220 0.35 -0.4
652,912 - ABID97_RS03220 0.35 -0.0
652,912 - ABID97_RS03220 0.35 +0.1
652,912 - ABID97_RS03220 0.35 +0.3
652,912 - ABID97_RS03220 0.35 +0.5
652,912 - ABID97_RS03220 0.35 +0.4
652,917 + ABID97_RS03220 0.36 -0.1
652,917 + ABID97_RS03220 0.36 +0.9
652,917 + ABID97_RS03220 0.36 +0.5
652,917 + ABID97_RS03220 0.36 -0.2
652,917 + ABID97_RS03220 0.36 -2.5
652,917 + ABID97_RS03220 0.36 -0.1
652,917 + ABID97_RS03220 0.36 +0.2
652,917 + ABID97_RS03220 0.36 +0.3
652,917 + ABID97_RS03220 0.36 +0.2
652,918 - ABID97_RS03220 0.36 +0.1
652,918 - ABID97_RS03220 0.36 -0.4
652,918 - ABID97_RS03220 0.36 -0.2
652,918 - ABID97_RS03220 0.36 +0.1
652,918 - ABID97_RS03220 0.36 +0.0
652,918 - ABID97_RS03220 0.36 +0.6
652,918 - ABID97_RS03220 0.36 -0.4
652,918 - ABID97_RS03220 0.36 -0.1
653,828 + ABID97_RS03225 0.62 -0.6
653,855 + ABID97_RS03225 0.66 -0.4
653,856 - ABID97_RS03225 0.66 -0.1
653,856 - ABID97_RS03225 0.66 -0.3
654,138 - -0.5
654,138 - +0.1
654,369 + ABID97_RS03230 0.34 -0.6
654,370 - ABID97_RS03230 0.34 +0.2
654,783 + -0.7
654,951 + ABID97_RS03235 0.13 +0.4
654,952 - ABID97_RS03235 0.13 -0.1
654,952 - ABID97_RS03235 0.13 +0.7
655,059 + ABID97_RS03235 0.20 +0.2
655,059 + ABID97_RS03235 0.20 +0.0
655,059 + ABID97_RS03235 0.20 +0.1
655,059 + ABID97_RS03235 0.20 -0.2
655,060 - ABID97_RS03235 0.20 -1.1
655,060 - ABID97_RS03235 0.20 -0.2
655,060 - ABID97_RS03235 0.20 +0.9
655,060 - ABID97_RS03235 0.20 -0.1

Or see this region's nucleotide sequence