Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27265

Experiment: NLDM_defined with PEG 6000 15 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27260 and ABID97_RS27265 are separated by 185 nucleotidesABID97_RS27265 and ABID97_RS27270 are separated by 10 nucleotidesABID97_RS27270 and ABID97_RS27275 are separated by 59 nucleotides ABID97_RS27260: ABID97_RS27260 - AraC family transcriptional regulator, at 366,065 to 366,934 _RS27260 ABID97_RS27265: ABID97_RS27265 - fumarylacetoacetate hydrolase family protein, at 367,120 to 367,989 _RS27265 ABID97_RS27270: ABID97_RS27270 - alpha/beta hydrolase, at 368,000 to 368,788 _RS27270 ABID97_RS27275: ABID97_RS27275 - amidohydrolase family protein, at 368,848 to 370,188 _RS27275 Position (kb) 367 368Strain fitness (log2 ratio) -1 0 1at 366.921 kb on + strandat 366.921 kb on + strandat 367.098 kb on + strandat 367.349 kb on + strand, within ABID97_RS27265at 368.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 15 vol%
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366,921 + -0.2
366,921 + -0.5
367,098 + +0.0
367,349 + ABID97_RS27265 0.26 +0.8
368,856 + -0.4

Or see this region's nucleotide sequence