Experiment: NLDM_defined with PEG 6000 15 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24090 and ABID97_RS24095 are separated by 6 nucleotides ABID97_RS24095 and ABID97_RS24100 are separated by 171 nucleotides ABID97_RS24100 and ABID97_RS24105 overlap by 58 nucleotides ABID97_RS24105 and ABID97_RS24110 overlap by 4 nucleotides
ABID97_RS24090: ABID97_RS24090 - DoxX family protein, at 4,977,977 to 4,978,453
_RS24090
ABID97_RS24095: ABID97_RS24095 - Crp/Fnr family transcriptional regulator, at 4,978,460 to 4,979,071
_RS24095
ABID97_RS24100: ABID97_RS24100 - adenylate/guanylate cyclase domain-containing protein, at 4,979,243 to 4,980,949
_RS24100
ABID97_RS24105: ABID97_RS24105 - RNA 3'-terminal phosphate cyclase, at 4,980,892 to 4,981,932
_RS24105
ABID97_RS24110: ABID97_RS24110 - nucleotidyltransferase domain-containing protein, at 4,981,929 to 4,982,783
_RS24110
Position (kb) 4979
4980
4981 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4978.374 kb on - strand, within ABID97_RS24090 at 4978.374 kb on - strand, within ABID97_RS24090 at 4978.983 kb on + strand, within ABID97_RS24095 at 4979.214 kb on + strand at 4979.214 kb on + strand at 4979.214 kb on + strand at 4979.333 kb on + strand at 4979.333 kb on + strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.334 kb on - strand at 4979.360 kb on - strand at 4979.360 kb on - strand at 4979.360 kb on - strand at 4979.360 kb on - strand at 4979.450 kb on + strand, within ABID97_RS24100 at 4979.506 kb on + strand, within ABID97_RS24100 at 4979.612 kb on + strand, within ABID97_RS24100 at 4979.630 kb on + strand, within ABID97_RS24100 at 4979.630 kb on + strand, within ABID97_RS24100 at 4979.631 kb on - strand, within ABID97_RS24100 at 4979.631 kb on - strand, within ABID97_RS24100 at 4979.915 kb on + strand, within ABID97_RS24100 at 4979.915 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.413 kb on + strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.414 kb on - strand, within ABID97_RS24100 at 4980.428 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.645 kb on + strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.646 kb on - strand, within ABID97_RS24100 at 4980.947 kb on + strand at 4980.947 kb on + strand at 4981.208 kb on + strand, within ABID97_RS24105 at 4981.209 kb on - strand, within ABID97_RS24105 at 4981.881 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 15 vol% remove 4,978,374 - ABID97_RS24090 0.83 -0.5 4,978,374 - ABID97_RS24090 0.83 -0.4 4,978,983 + ABID97_RS24095 0.85 +0.2 4,979,214 + -0.1 4,979,214 + -0.1 4,979,214 + +0.3 4,979,333 + -0.4 4,979,333 + +0.5 4,979,334 - -0.4 4,979,334 - -0.0 4,979,334 - -0.0 4,979,334 - -0.1 4,979,334 - -3.0 4,979,334 - +0.0 4,979,360 - -0.0 4,979,360 - +0.1 4,979,360 - +0.6 4,979,360 - +0.1 4,979,450 + ABID97_RS24100 0.12 -0.1 4,979,506 + ABID97_RS24100 0.15 +0.6 4,979,612 + ABID97_RS24100 0.22 +0.1 4,979,630 + ABID97_RS24100 0.23 +0.2 4,979,630 + ABID97_RS24100 0.23 +0.5 4,979,631 - ABID97_RS24100 0.23 +0.1 4,979,631 - ABID97_RS24100 0.23 +0.2 4,979,915 + ABID97_RS24100 0.39 +0.5 4,979,915 + ABID97_RS24100 0.39 +0.6 4,980,413 + ABID97_RS24100 0.69 +0.0 4,980,413 + ABID97_RS24100 0.69 -0.0 4,980,413 + ABID97_RS24100 0.69 -0.1 4,980,414 - ABID97_RS24100 0.69 +0.0 4,980,414 - ABID97_RS24100 0.69 +0.0 4,980,414 - ABID97_RS24100 0.69 -0.1 4,980,428 + ABID97_RS24100 0.69 -0.3 4,980,645 + ABID97_RS24100 0.82 -0.1 4,980,645 + ABID97_RS24100 0.82 -0.3 4,980,645 + ABID97_RS24100 0.82 -0.2 4,980,646 - ABID97_RS24100 0.82 +0.3 4,980,646 - ABID97_RS24100 0.82 -0.1 4,980,646 - ABID97_RS24100 0.82 +0.3 4,980,646 - ABID97_RS24100 0.82 +1.0 4,980,646 - ABID97_RS24100 0.82 +0.3 4,980,947 + +0.5 4,980,947 + +1.2 4,981,208 + ABID97_RS24105 0.30 +0.2 4,981,209 - ABID97_RS24105 0.30 -0.1 4,981,881 + +0.1
Or see this region's nucleotide sequence