Experiment: NLDM_defined with PEG 6000 15 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01395 and ABID97_RS01400 are separated by 7 nucleotides ABID97_RS01400 and ABID97_RS01405 are separated by 117 nucleotides ABID97_RS01405 and ABID97_RS01410 are separated by 63 nucleotides
ABID97_RS01395: ABID97_RS01395 - MarR family transcriptional regulator, at 282,494 to 282,916
_RS01395
ABID97_RS01400: ABID97_RS01400 - SDR family oxidoreductase, at 282,924 to 283,685
_RS01400
ABID97_RS01405: ABID97_RS01405 - LysR family transcriptional regulator, at 283,803 to 284,729
_RS01405
ABID97_RS01410: ABID97_RS01410 - tripartite tricarboxylate transporter substrate binding protein, at 284,793 to 285,806
_RS01410
Position (kb) 283
284
285 Strain fitness (log2 ratio) -1
0
1 at 283.201 kb on + strand, within ABID97_RS01400 at 283.555 kb on + strand, within ABID97_RS01400 at 283.556 kb on - strand, within ABID97_RS01400 at 283.556 kb on - strand, within ABID97_RS01400 at 284.163 kb on - strand, within ABID97_RS01405 at 284.622 kb on + strand, within ABID97_RS01405 at 284.622 kb on + strand, within ABID97_RS01405 at 284.623 kb on - strand, within ABID97_RS01405 at 284.727 kb on + strand at 285.072 kb on + strand, within ABID97_RS01410 at 285.073 kb on - strand, within ABID97_RS01410 at 285.073 kb on - strand, within ABID97_RS01410 at 285.241 kb on + strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.242 kb on - strand, within ABID97_RS01410 at 285.259 kb on - strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.375 kb on + strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410 at 285.376 kb on - strand, within ABID97_RS01410
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 15 vol% remove 283,201 + ABID97_RS01400 0.36 +0.1 283,555 + ABID97_RS01400 0.83 -0.4 283,556 - ABID97_RS01400 0.83 +0.7 283,556 - ABID97_RS01400 0.83 +0.2 284,163 - ABID97_RS01405 0.39 +0.4 284,622 + ABID97_RS01405 0.88 +0.6 284,622 + ABID97_RS01405 0.88 -0.2 284,623 - ABID97_RS01405 0.88 +0.2 284,727 + -0.1 285,072 + ABID97_RS01410 0.28 +0.0 285,073 - ABID97_RS01410 0.28 +0.1 285,073 - ABID97_RS01410 0.28 -0.8 285,241 + ABID97_RS01410 0.44 -0.1 285,242 - ABID97_RS01410 0.44 +0.1 285,242 - ABID97_RS01410 0.44 -0.3 285,242 - ABID97_RS01410 0.44 +0.3 285,242 - ABID97_RS01410 0.44 -0.3 285,242 - ABID97_RS01410 0.44 -0.3 285,259 - ABID97_RS01410 0.46 +0.2 285,375 + ABID97_RS01410 0.57 -0.2 285,375 + ABID97_RS01410 0.57 +0.1 285,376 - ABID97_RS01410 0.57 -0.7 285,376 - ABID97_RS01410 0.57 -0.2 285,376 - ABID97_RS01410 0.57 -0.3
Or see this region's nucleotide sequence