Experiment: NLDM_defined with PEG 6000 20 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS01825 and ABID97_RS01830 are separated by 18 nucleotides ABID97_RS01830 and ABID97_RS01835 are separated by 73 nucleotides ABID97_RS01835 and ABID97_RS01840 are separated by 18 nucleotides
ABID97_RS01825: ABID97_RS01825 - LysM peptidoglycan-binding domain-containing protein, at 356,373 to 357,587
_RS01825
ABID97_RS01830: ABID97_RS01830 - DNA-processing protein DprA, at 357,606 to 358,766
_RS01830
ABID97_RS01835: ABID97_RS01835 - DUF494 domain-containing protein, at 358,840 to 359,358
_RS01835
ABID97_RS01840: ABID97_RS01840 - DUF1631 family protein, at 359,377 to 361,728
_RS01840
Position (kb) 357
358
359 Strain fitness (log2 ratio) -1
0
1 at 356.688 kb on + strand, within ABID97_RS01825 at 356.689 kb on - strand, within ABID97_RS01825 at 356.706 kb on + strand, within ABID97_RS01825 at 356.706 kb on + strand, within ABID97_RS01825 at 356.706 kb on + strand, within ABID97_RS01825 at 356.707 kb on - strand, within ABID97_RS01825 at 356.967 kb on + strand, within ABID97_RS01825 at 356.968 kb on - strand, within ABID97_RS01825 at 356.968 kb on - strand, within ABID97_RS01825 at 356.988 kb on - strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.096 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.264 kb on + strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.265 kb on - strand, within ABID97_RS01825 at 357.315 kb on + strand, within ABID97_RS01825 at 357.545 kb on + strand at 357.546 kb on - strand at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.933 kb on + strand, within ABID97_RS01830 at 357.934 kb on - strand, within ABID97_RS01830 at 357.934 kb on - strand, within ABID97_RS01830 at 357.982 kb on + strand, within ABID97_RS01830 at 358.191 kb on + strand, within ABID97_RS01830 at 358.764 kb on + strand at 358.828 kb on + strand at 358.829 kb on - strand at 358.829 kb on - strand at 358.830 kb on + strand at 358.830 kb on + strand at 358.831 kb on - strand at 359.104 kb on + strand, within ABID97_RS01835 at 359.105 kb on - strand, within ABID97_RS01835 at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.378 kb on + strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.379 kb on - strand at 359.486 kb on + strand at 359.487 kb on - strand at 359.487 kb on - strand at 359.512 kb on + strand at 359.513 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 20 vol% remove 356,688 + ABID97_RS01825 0.26 -0.9 356,689 - ABID97_RS01825 0.26 +0.6 356,706 + ABID97_RS01825 0.27 +0.1 356,706 + ABID97_RS01825 0.27 -0.1 356,706 + ABID97_RS01825 0.27 +0.1 356,707 - ABID97_RS01825 0.27 -0.1 356,967 + ABID97_RS01825 0.49 +0.1 356,968 - ABID97_RS01825 0.49 +0.1 356,968 - ABID97_RS01825 0.49 +0.2 356,988 - ABID97_RS01825 0.51 -0.2 357,096 + ABID97_RS01825 0.60 -0.5 357,096 + ABID97_RS01825 0.60 -0.1 357,096 + ABID97_RS01825 0.60 -0.7 357,096 + ABID97_RS01825 0.60 +1.1 357,096 + ABID97_RS01825 0.60 +0.8 357,264 + ABID97_RS01825 0.73 -0.1 357,264 + ABID97_RS01825 0.73 -0.1 357,264 + ABID97_RS01825 0.73 -0.1 357,264 + ABID97_RS01825 0.73 -0.3 357,264 + ABID97_RS01825 0.73 -0.5 357,264 + ABID97_RS01825 0.73 -0.0 357,265 - ABID97_RS01825 0.73 -0.1 357,265 - ABID97_RS01825 0.73 -0.5 357,265 - ABID97_RS01825 0.73 -0.6 357,265 - ABID97_RS01825 0.73 +0.2 357,265 - ABID97_RS01825 0.73 +0.2 357,315 + ABID97_RS01825 0.78 -0.3 357,545 + +0.3 357,546 - +0.9 357,933 + ABID97_RS01830 0.28 -0.1 357,933 + ABID97_RS01830 0.28 +0.0 357,933 + ABID97_RS01830 0.28 -0.9 357,933 + ABID97_RS01830 0.28 -1.0 357,933 + ABID97_RS01830 0.28 -1.1 357,934 - ABID97_RS01830 0.28 -0.1 357,934 - ABID97_RS01830 0.28 -0.1 357,982 + ABID97_RS01830 0.32 -0.5 358,191 + ABID97_RS01830 0.50 -0.1 358,764 + +0.3 358,828 + +0.6 358,829 - +0.2 358,829 - -0.3 358,830 + +0.0 358,830 + -0.3 358,831 - -0.2 359,104 + ABID97_RS01835 0.51 +0.1 359,105 - ABID97_RS01835 0.51 -0.1 359,378 + +0.1 359,378 + -0.2 359,378 + -0.0 359,378 + -0.8 359,378 + -1.0 359,378 + +0.4 359,378 + -0.4 359,379 - -0.2 359,379 - +0.2 359,379 - -0.0 359,379 - +0.7 359,379 - -0.3 359,486 + +0.4 359,487 - -0.4 359,487 - +0.0 359,512 + +1.1 359,513 - +0.4
Or see this region's nucleotide sequence