Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28345

Experiment: NLDM_defined with PEG 6000 20 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28340 and ABID97_RS28345 overlap by 4 nucleotidesABID97_RS28345 and ABID97_RS28350 are separated by 18 nucleotides ABID97_RS28340: ABID97_RS28340 - Rieske 2Fe-2S domain-containing protein, at 588,431 to 589,741 _RS28340 ABID97_RS28345: ABID97_RS28345 - nuclear transport factor 2 family protein, at 589,738 to 590,253 _RS28345 ABID97_RS28350: ABID97_RS28350 - amidohydrolase family protein, at 590,272 to 591,267 _RS28350 Position (kb) 589 590 591Strain fitness (log2 ratio) -1 0 1at 588.767 kb on - strand, within ABID97_RS28340at 589.895 kb on - strand, within ABID97_RS28345at 589.948 kb on + strand, within ABID97_RS28345at 590.446 kb on + strand, within ABID97_RS28350

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 20 vol%
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588,767 - ABID97_RS28340 0.26 +1.6
589,895 - ABID97_RS28345 0.30 -0.5
589,948 + ABID97_RS28345 0.41 +1.4
590,446 + ABID97_RS28350 0.17 +0.8

Or see this region's nucleotide sequence