Experiment: NLDM_defined with PEG 6000 20 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26630 and ABID97_RS26635 are separated by 72 nucleotides ABID97_RS26635 and ABID97_RS26640 are separated by 16 nucleotides ABID97_RS26640 and ABID97_RS26645 are separated by 175 nucleotides ABID97_RS26645 and ABID97_RS26650 are separated by 7 nucleotides
ABID97_RS26630: ABID97_RS26630 - aspartate aminotransferase family protein, at 250,876 to 252,285
_RS26630
ABID97_RS26635: ABID97_RS26635 - LysR family transcriptional regulator, at 252,358 to 253,275
_RS26635
ABID97_RS26640: ABID97_RS26640 - hypothetical protein, at 253,292 to 253,549
_RS26640
ABID97_RS26645: ABID97_RS26645 - hypothetical protein, at 253,725 to 254,081
_RS26645
ABID97_RS26650: ABID97_RS26650 - zeta toxin family protein, at 254,089 to 254,682
_RS26650
Position (kb) 252
253
254 Strain fitness (log2 ratio) -1
0
1 at 251.826 kb on - strand, within ABID97_RS26630 at 252.368 kb on + strand at 252.369 kb on - strand at 252.369 kb on - strand at 252.949 kb on + strand, within ABID97_RS26635 at 253.046 kb on - strand, within ABID97_RS26635 at 253.192 kb on + strand at 253.192 kb on + strand at 253.192 kb on + strand at 253.193 kb on - strand at 253.464 kb on + strand, within ABID97_RS26640 at 253.465 kb on - strand, within ABID97_RS26640 at 253.465 kb on - strand, within ABID97_RS26640 at 253.465 kb on - strand, within ABID97_RS26640 at 253.539 kb on + strand at 253.539 kb on + strand at 253.724 kb on + strand at 253.826 kb on - strand, within ABID97_RS26645 at 254.162 kb on + strand, within ABID97_RS26650 at 254.162 kb on + strand, within ABID97_RS26650 at 254.163 kb on - strand, within ABID97_RS26650 at 254.163 kb on - strand, within ABID97_RS26650
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 20 vol% remove 251,826 - ABID97_RS26630 0.67 -0.0 252,368 + -0.2 252,369 - -0.3 252,369 - +0.5 252,949 + ABID97_RS26635 0.64 +0.8 253,046 - ABID97_RS26635 0.75 +0.1 253,192 + -0.2 253,192 + -0.6 253,192 + +0.3 253,193 - +0.5 253,464 + ABID97_RS26640 0.67 -0.3 253,465 - ABID97_RS26640 0.67 +0.1 253,465 - ABID97_RS26640 0.67 +0.2 253,465 - ABID97_RS26640 0.67 -0.9 253,539 + -0.6 253,539 + -0.6 253,724 + -1.5 253,826 - ABID97_RS26645 0.28 +0.1 254,162 + ABID97_RS26650 0.12 +0.4 254,162 + ABID97_RS26650 0.12 -0.2 254,163 - ABID97_RS26650 0.12 -1.0 254,163 - ABID97_RS26650 0.12 -0.4
Or see this region's nucleotide sequence