Experiment: NLDM_defined with PEG 6000 20 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18930 and ABID97_RS18935 are separated by 207 nucleotides ABID97_RS18935 and ABID97_RS18940 are separated by 115 nucleotides ABID97_RS18940 and ABID97_RS18945 are separated by 91 nucleotides ABID97_RS18945 and ABID97_RS18950 are separated by 19 nucleotides
ABID97_RS18930: ABID97_RS18930 - helix-turn-helix transcriptional regulator, at 3,898,969 to 3,899,820
_RS18930
ABID97_RS18935: ABID97_RS18935 - hypothetical protein, at 3,900,028 to 3,900,615
_RS18935
ABID97_RS18940: ABID97_RS18940 - Crp/Fnr family transcriptional regulator, at 3,900,731 to 3,901,483
_RS18940
ABID97_RS18945: ABID97_RS18945 - ABC transporter ATP-binding protein, at 3,901,575 to 3,902,294
_RS18945
ABID97_RS18950: ABID97_RS18950 - ABC transporter ATP-binding protein, at 3,902,314 to 3,903,141
_RS18950
Position (kb) 3900
3901
3902 Strain fitness (log2 ratio) -1
0
1 at 3899.881 kb on + strand at 3900.112 kb on - strand, within ABID97_RS18935 at 3900.122 kb on - strand, within ABID97_RS18935 at 3900.122 kb on - strand, within ABID97_RS18935 at 3900.329 kb on + strand, within ABID97_RS18935 at 3900.359 kb on + strand, within ABID97_RS18935 at 3900.486 kb on - strand, within ABID97_RS18935 at 3900.830 kb on - strand, within ABID97_RS18940 at 3902.002 kb on - strand, within ABID97_RS18945 at 3902.002 kb on - strand, within ABID97_RS18945 at 3902.405 kb on + strand, within ABID97_RS18950 at 3902.405 kb on + strand, within ABID97_RS18950 at 3902.406 kb on - strand, within ABID97_RS18950
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 20 vol% remove 3,899,881 + -0.0 3,900,112 - ABID97_RS18935 0.14 -1.0 3,900,122 - ABID97_RS18935 0.16 -1.1 3,900,122 - ABID97_RS18935 0.16 -0.4 3,900,329 + ABID97_RS18935 0.51 -0.6 3,900,359 + ABID97_RS18935 0.56 -0.0 3,900,486 - ABID97_RS18935 0.78 -0.1 3,900,830 - ABID97_RS18940 0.13 +0.8 3,902,002 - ABID97_RS18945 0.59 -0.4 3,902,002 - ABID97_RS18945 0.59 +0.3 3,902,405 + ABID97_RS18950 0.11 +0.9 3,902,405 + ABID97_RS18950 0.11 +0.5 3,902,406 - ABID97_RS18950 0.11 -0.1
Or see this region's nucleotide sequence