Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26095

Experiment: NLDM_defined with PEG 6000 25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS26090 and ABID97_RS26095 are separated by 142 nucleotidesABID97_RS26095 and ABID97_RS26100 are separated by 10 nucleotides ABID97_RS26090: ABID97_RS26090 - homoserine O-acetyltransferase, at 142,215 to 143,396 _RS26090 ABID97_RS26095: ABID97_RS26095 - SRPBCC family protein, at 143,539 to 143,988 _RS26095 ABID97_RS26100: ABID97_RS26100 - LysR family transcriptional regulator, at 143,999 to 144,895 _RS26100 Position (kb) 143 144Strain fitness (log2 ratio) -1 0 1at 143.148 kb on + strand, within ABID97_RS26090at 143.220 kb on - strand, within ABID97_RS26090at 143.302 kb on - strandat 143.302 kb on - strandat 143.395 kb on - strandat 143.599 kb on + strand, within ABID97_RS26095at 143.733 kb on + strand, within ABID97_RS26095at 143.924 kb on - strand, within ABID97_RS26095at 144.387 kb on + strand, within ABID97_RS26100

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 25 vol%
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143,148 + ABID97_RS26090 0.79 -0.0
143,220 - ABID97_RS26090 0.85 +0.0
143,302 - -0.1
143,302 - -0.2
143,395 - -0.5
143,599 + ABID97_RS26095 0.13 -0.4
143,733 + ABID97_RS26095 0.43 -0.9
143,924 - ABID97_RS26095 0.86 -0.8
144,387 + ABID97_RS26100 0.43 -1.6

Or see this region's nucleotide sequence