Experiment: NLDM_defined with PEG 6000 25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22875 and ABID97_RS22880 overlap by 1 nucleotides ABID97_RS22880 and ABID97_RS22885 are separated by 1 nucleotides ABID97_RS22885 and ABID97_RS22890 are separated by 27 nucleotides
ABID97_RS22875: ABID97_RS22875 - ABC transporter ATP-binding protein, at 4,736,597 to 4,737,631
_RS22875
ABID97_RS22880: ABID97_RS22880 - ABC transporter permease, at 4,737,631 to 4,738,470
_RS22880
ABID97_RS22885: ABID97_RS22885 - ABC transporter permease, at 4,738,472 to 4,739,413
_RS22885
ABID97_RS22890: ABID97_RS22890 - ABC transporter substrate-binding protein, at 4,739,441 to 4,741,015
_RS22890
Position (kb) 4737
4738
4739 Strain fitness (log2 ratio) -1
0
1 at 4736.853 kb on + strand, within ABID97_RS22875 at 4737.758 kb on + strand, within ABID97_RS22880 at 4737.758 kb on + strand, within ABID97_RS22880 at 4738.025 kb on + strand, within ABID97_RS22880 at 4738.025 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.265 kb on + strand, within ABID97_RS22880 at 4738.266 kb on - strand, within ABID97_RS22880 at 4738.266 kb on - strand, within ABID97_RS22880 at 4738.504 kb on - strand at 4738.536 kb on + strand at 4738.536 kb on + strand at 4738.537 kb on - strand at 4738.780 kb on - strand, within ABID97_RS22885 at 4739.403 kb on + strand at 4739.404 kb on - strand at 4739.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 25 vol% remove 4,736,853 + ABID97_RS22875 0.25 -0.4 4,737,758 + ABID97_RS22880 0.15 -0.2 4,737,758 + ABID97_RS22880 0.15 +0.5 4,738,025 + ABID97_RS22880 0.47 +0.7 4,738,025 + ABID97_RS22880 0.47 +0.8 4,738,265 + ABID97_RS22880 0.75 +0.3 4,738,265 + ABID97_RS22880 0.75 -0.2 4,738,265 + ABID97_RS22880 0.75 -0.0 4,738,265 + ABID97_RS22880 0.75 +0.0 4,738,266 - ABID97_RS22880 0.76 +0.2 4,738,266 - ABID97_RS22880 0.76 +0.4 4,738,504 - -1.1 4,738,536 + -0.2 4,738,536 + -0.4 4,738,537 - +0.8 4,738,780 - ABID97_RS22885 0.33 +0.3 4,739,403 + -0.2 4,739,404 - +0.3 4,739,442 + -0.0
Or see this region's nucleotide sequence