Experiment: NLDM_defined with PEG 6000 25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15930 and ABID97_RS15935 are separated by 64 nucleotides ABID97_RS15935 and ABID97_RS15940 are separated by 11 nucleotides ABID97_RS15940 and ABID97_RS15945 are separated by 4 nucleotides
ABID97_RS15930: ABID97_RS15930 - Tex family protein, at 3,300,274 to 3,302,649
_RS15930
ABID97_RS15935: ABID97_RS15935 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,302,714 to 3,302,971
_RS15935
ABID97_RS15940: ABID97_RS15940 - type II toxin-antitoxin system VapC family toxin, at 3,302,983 to 3,303,396
_RS15940
ABID97_RS15945: ABID97_RS15945 - patatin-like phospholipase family protein, at 3,303,401 to 3,304,474
_RS15945
Position (kb)
3302
3303
3304 Strain fitness (log2 ratio)
-2
-1
0
1 at 3302.647 kb on + strand at 3302.987 kb on - strand at 3303.196 kb on + strand, within ABID97_RS15940 at 3303.196 kb on + strand, within ABID97_RS15940 at 3303.197 kb on - strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.271 kb on + strand, within ABID97_RS15940 at 3303.272 kb on - strand, within ABID97_RS15940 at 3303.419 kb on + strand at 3303.671 kb on + strand, within ABID97_RS15945 at 3303.764 kb on + strand, within ABID97_RS15945 at 3303.803 kb on + strand, within ABID97_RS15945 at 3304.109 kb on + strand, within ABID97_RS15945 at 3304.133 kb on + strand, within ABID97_RS15945 at 3304.134 kb on - strand, within ABID97_RS15945 at 3304.151 kb on + strand, within ABID97_RS15945 at 3304.152 kb on - strand, within ABID97_RS15945 at 3304.152 kb on - strand, within ABID97_RS15945 at 3304.181 kb on + strand, within ABID97_RS15945 at 3304.181 kb on + strand, within ABID97_RS15945
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 25 vol% remove 3,302,647 + -0.3 3,302,987 - -2.0 3,303,196 + ABID97_RS15940 0.51 +1.4 3,303,196 + ABID97_RS15940 0.51 +0.4 3,303,197 - ABID97_RS15940 0.52 +0.5 3,303,271 + ABID97_RS15940 0.70 +0.3 3,303,271 + ABID97_RS15940 0.70 -1.8 3,303,271 + ABID97_RS15940 0.70 +0.1 3,303,272 - ABID97_RS15940 0.70 -1.2 3,303,419 + -1.1 3,303,671 + ABID97_RS15945 0.25 -0.2 3,303,764 + ABID97_RS15945 0.34 +0.1 3,303,803 + ABID97_RS15945 0.37 -0.0 3,304,109 + ABID97_RS15945 0.66 -0.5 3,304,133 + ABID97_RS15945 0.68 -0.6 3,304,134 - ABID97_RS15945 0.68 +0.2 3,304,151 + ABID97_RS15945 0.70 -0.7 3,304,152 - ABID97_RS15945 0.70 -0.1 3,304,152 - ABID97_RS15945 0.70 -2.6 3,304,181 + ABID97_RS15945 0.73 +0.9 3,304,181 + ABID97_RS15945 0.73 +0.1
Or see this region's nucleotide sequence