Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15940

Experiment: NLDM_defined with PEG 6000 25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15930 and ABID97_RS15935 are separated by 64 nucleotidesABID97_RS15935 and ABID97_RS15940 are separated by 11 nucleotidesABID97_RS15940 and ABID97_RS15945 are separated by 4 nucleotides ABID97_RS15930: ABID97_RS15930 - Tex family protein, at 3,300,274 to 3,302,649 _RS15930 ABID97_RS15935: ABID97_RS15935 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,302,714 to 3,302,971 _RS15935 ABID97_RS15940: ABID97_RS15940 - type II toxin-antitoxin system VapC family toxin, at 3,302,983 to 3,303,396 _RS15940 ABID97_RS15945: ABID97_RS15945 - patatin-like phospholipase family protein, at 3,303,401 to 3,304,474 _RS15945 Position (kb) 3302 3303 3304Strain fitness (log2 ratio) -2 -1 0 1at 3302.647 kb on + strandat 3302.987 kb on - strandat 3303.196 kb on + strand, within ABID97_RS15940at 3303.196 kb on + strand, within ABID97_RS15940at 3303.197 kb on - strand, within ABID97_RS15940at 3303.271 kb on + strand, within ABID97_RS15940at 3303.271 kb on + strand, within ABID97_RS15940at 3303.271 kb on + strand, within ABID97_RS15940at 3303.272 kb on - strand, within ABID97_RS15940at 3303.419 kb on + strandat 3303.671 kb on + strand, within ABID97_RS15945at 3303.764 kb on + strand, within ABID97_RS15945at 3303.803 kb on + strand, within ABID97_RS15945at 3304.109 kb on + strand, within ABID97_RS15945at 3304.133 kb on + strand, within ABID97_RS15945at 3304.134 kb on - strand, within ABID97_RS15945at 3304.151 kb on + strand, within ABID97_RS15945at 3304.152 kb on - strand, within ABID97_RS15945at 3304.152 kb on - strand, within ABID97_RS15945at 3304.181 kb on + strand, within ABID97_RS15945at 3304.181 kb on + strand, within ABID97_RS15945

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Per-strain Table

Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 25 vol%
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3,302,647 + -0.3
3,302,987 - -2.0
3,303,196 + ABID97_RS15940 0.51 +1.4
3,303,196 + ABID97_RS15940 0.51 +0.4
3,303,197 - ABID97_RS15940 0.52 +0.5
3,303,271 + ABID97_RS15940 0.70 +0.3
3,303,271 + ABID97_RS15940 0.70 -1.8
3,303,271 + ABID97_RS15940 0.70 +0.1
3,303,272 - ABID97_RS15940 0.70 -1.2
3,303,419 + -1.1
3,303,671 + ABID97_RS15945 0.25 -0.2
3,303,764 + ABID97_RS15945 0.34 +0.1
3,303,803 + ABID97_RS15945 0.37 -0.0
3,304,109 + ABID97_RS15945 0.66 -0.5
3,304,133 + ABID97_RS15945 0.68 -0.6
3,304,134 - ABID97_RS15945 0.68 +0.2
3,304,151 + ABID97_RS15945 0.70 -0.7
3,304,152 - ABID97_RS15945 0.70 -0.1
3,304,152 - ABID97_RS15945 0.70 -2.6
3,304,181 + ABID97_RS15945 0.73 +0.9
3,304,181 + ABID97_RS15945 0.73 +0.1

Or see this region's nucleotide sequence