Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13345
Experiment: NLDM_defined with PEG 6000 25 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | NLDM_defined with PEG 6000 25 vol% |
|---|---|---|---|---|---|
| remove | |||||
| 2,778,013 | - | ABID97_RS13340 | 0.37 | +0.1 | |
| 2,778,808 | + | ABID97_RS13345 | 0.13 | +0.6 | |
| 2,779,480 | + | ABID97_RS13345 | 0.78 | +0.4 | |
| 2,779,481 | - | ABID97_RS13345 | 0.78 | +0.5 | |
| 2,779,481 | - | ABID97_RS13345 | 0.78 | +0.8 | |
| 2,779,481 | - | ABID97_RS13345 | 0.78 | +0.8 | |
| 2,779,481 | - | ABID97_RS13345 | 0.78 | -0.8 | |
| 2,779,523 | - | ABID97_RS13345 | 0.82 | +1.3 | |
| 2,779,567 | + | ABID97_RS13345 | 0.86 | +1.5 | |
| 2,779,568 | - | ABID97_RS13345 | 0.86 | +0.3 | |
| 2,779,568 | - | ABID97_RS13345 | 0.86 | +1.3 | |
| 2,780,645 | + | ABID97_RS13350 | 0.56 | -0.0 | |
| 2,780,645 | + | ABID97_RS13350 | 0.56 | -2.0 | |
| 2,780,645 | + | ABID97_RS13350 | 0.56 | -0.0 | |
| 2,780,669 | + | ABID97_RS13350 | 0.58 | +0.2 |
Or see this region's nucleotide sequence