Experiment: NLDM_defined with PEG 6000 25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00830 and ABID97_RS00835 are separated by 63 nucleotides ABID97_RS00835 and ABID97_RS00840 are separated by 220 nucleotides ABID97_RS00840 and ABID97_RS00845 are separated by 91 nucleotides ABID97_RS00845 and ABID97_RS00850 overlap by 4 nucleotides
ABID97_RS00830: ABID97_RS00830 - peptidoglycan-binding protein LysM, at 164,764 to 165,225
_RS00830
ABID97_RS00835: ABID97_RS00835 - rhodanese-like domain-containing protein, at 165,289 to 165,702
_RS00835
ABID97_RS00840: ABID97_RS00840 - TRAP transporter substrate-binding protein, at 165,923 to 167,038
_RS00840
ABID97_RS00845: ABID97_RS00845 - TRAP transporter small permease subunit, at 167,130 to 167,750
_RS00845
ABID97_RS00850: ABID97_RS00850 - TRAP transporter large permease subunit, at 167,747 to 169,714
_RS00850
Position (kb) 165
166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.067 kb on + strand, within ABID97_RS00830 at 165.068 kb on - strand, within ABID97_RS00830 at 165.068 kb on - strand, within ABID97_RS00830 at 165.116 kb on - strand, within ABID97_RS00830 at 165.116 kb on - strand, within ABID97_RS00830 at 165.136 kb on + strand, within ABID97_RS00830 at 165.137 kb on - strand, within ABID97_RS00830 at 165.191 kb on - strand at 165.389 kb on + strand, within ABID97_RS00835 at 165.389 kb on + strand, within ABID97_RS00835 at 165.390 kb on - strand, within ABID97_RS00835 at 165.675 kb on - strand at 165.703 kb on - strand at 165.866 kb on - strand at 165.907 kb on + strand at 165.908 kb on - strand at 166.224 kb on - strand, within ABID97_RS00840 at 166.313 kb on + strand, within ABID97_RS00840 at 166.314 kb on - strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.346 kb on + strand, within ABID97_RS00840 at 166.347 kb on - strand, within ABID97_RS00840 at 166.376 kb on + strand, within ABID97_RS00840 at 166.377 kb on - strand, within ABID97_RS00840 at 166.383 kb on - strand, within ABID97_RS00840 at 166.796 kb on + strand, within ABID97_RS00840 at 166.797 kb on - strand, within ABID97_RS00840 at 166.977 kb on - strand at 166.977 kb on - strand at 167.000 kb on + strand at 167.000 kb on + strand at 167.000 kb on + strand at 167.010 kb on - strand at 167.241 kb on + strand, within ABID97_RS00845 at 167.242 kb on - strand, within ABID97_RS00845 at 167.293 kb on - strand, within ABID97_RS00845 at 167.365 kb on - strand, within ABID97_RS00845 at 167.365 kb on - strand, within ABID97_RS00845 at 167.412 kb on + strand, within ABID97_RS00845 at 167.412 kb on + strand, within ABID97_RS00845 at 167.412 kb on + strand, within ABID97_RS00845 at 167.466 kb on + strand, within ABID97_RS00845 at 167.466 kb on + strand, within ABID97_RS00845 at 167.466 kb on + strand, within ABID97_RS00845 at 167.467 kb on - strand, within ABID97_RS00845 at 167.467 kb on - strand, within ABID97_RS00845 at 167.952 kb on - strand, within ABID97_RS00850 at 168.000 kb on - strand, within ABID97_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_defined with PEG 6000 25 vol% remove 165,067 + ABID97_RS00830 0.66 +0.2 165,068 - ABID97_RS00830 0.66 -0.3 165,068 - ABID97_RS00830 0.66 +1.9 165,116 - ABID97_RS00830 0.76 -0.4 165,116 - ABID97_RS00830 0.76 +0.4 165,136 + ABID97_RS00830 0.81 +2.2 165,137 - ABID97_RS00830 0.81 -0.6 165,191 - -0.0 165,389 + ABID97_RS00835 0.24 +2.4 165,389 + ABID97_RS00835 0.24 +0.4 165,390 - ABID97_RS00835 0.24 +0.1 165,675 - +0.0 165,703 - +0.0 165,866 - -0.8 165,907 + -0.8 165,908 - +0.0 166,224 - ABID97_RS00840 0.27 -0.1 166,313 + ABID97_RS00840 0.35 +0.2 166,314 - ABID97_RS00840 0.35 -0.1 166,346 + ABID97_RS00840 0.38 -1.3 166,346 + ABID97_RS00840 0.38 -0.2 166,346 + ABID97_RS00840 0.38 -0.6 166,347 - ABID97_RS00840 0.38 -1.5 166,376 + ABID97_RS00840 0.41 +1.3 166,377 - ABID97_RS00840 0.41 +0.3 166,383 - ABID97_RS00840 0.41 +0.2 166,796 + ABID97_RS00840 0.78 -0.6 166,797 - ABID97_RS00840 0.78 -0.5 166,977 - +0.2 166,977 - -0.0 167,000 + -0.4 167,000 + -1.4 167,000 + +0.1 167,010 - -1.1 167,241 + ABID97_RS00845 0.18 -0.2 167,242 - ABID97_RS00845 0.18 +0.9 167,293 - ABID97_RS00845 0.26 +0.7 167,365 - ABID97_RS00845 0.38 -0.8 167,365 - ABID97_RS00845 0.38 +0.6 167,412 + ABID97_RS00845 0.45 +0.7 167,412 + ABID97_RS00845 0.45 -0.3 167,412 + ABID97_RS00845 0.45 -0.1 167,466 + ABID97_RS00845 0.54 -0.5 167,466 + ABID97_RS00845 0.54 -0.6 167,466 + ABID97_RS00845 0.54 +0.0 167,467 - ABID97_RS00845 0.54 +0.7 167,467 - ABID97_RS00845 0.54 +0.1 167,952 - ABID97_RS00850 0.10 +0.1 168,000 - ABID97_RS00850 0.13 -3.1
Or see this region's nucleotide sequence