Experiment: NLDM_pH6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00165 and ABID97_RS00170 overlap by 4 nucleotides ABID97_RS00170 and ABID97_RS00175 overlap by 4 nucleotides ABID97_RS00175 and ABID97_RS00180 are separated by 18 nucleotides
ABID97_RS00165: ABID97_RS00165 - prolyl oligopeptidase family serine peptidase, at 39,455 to 41,512
_RS00165
ABID97_RS00170: ABID97_RS00170 - arginase, at 41,509 to 42,432
_RS00170
ABID97_RS00175: ABID97_RS00175 - DUF805 domain-containing protein, at 42,429 to 42,971
_RS00175
ABID97_RS00180: ABID97_RS00180 - DUF805 domain-containing protein, at 42,990 to 43,544
_RS00180
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1 at 40.604 kb on + strand, within ABID97_RS00165 at 40.604 kb on + strand, within ABID97_RS00165 at 40.604 kb on + strand, within ABID97_RS00165 at 40.604 kb on + strand, within ABID97_RS00165 at 40.646 kb on + strand, within ABID97_RS00165 at 40.647 kb on - strand, within ABID97_RS00165 at 40.769 kb on + strand, within ABID97_RS00165 at 40.769 kb on + strand, within ABID97_RS00165 at 40.769 kb on + strand, within ABID97_RS00165 at 40.769 kb on + strand, within ABID97_RS00165 at 40.770 kb on - strand, within ABID97_RS00165 at 40.826 kb on + strand, within ABID97_RS00165 at 40.826 kb on + strand, within ABID97_RS00165 at 40.865 kb on + strand, within ABID97_RS00165 at 40.865 kb on + strand, within ABID97_RS00165 at 40.865 kb on + strand, within ABID97_RS00165 at 40.865 kb on + strand, within ABID97_RS00165 at 40.866 kb on - strand, within ABID97_RS00165 at 40.911 kb on - strand, within ABID97_RS00165 at 41.115 kb on - strand, within ABID97_RS00165 at 41.115 kb on - strand, within ABID97_RS00165 at 41.172 kb on - strand, within ABID97_RS00165 at 41.172 kb on - strand, within ABID97_RS00165 at 41.210 kb on + strand, within ABID97_RS00165 at 41.384 kb on + strand at 41.385 kb on - strand at 41.400 kb on - strand at 41.472 kb on - strand at 41.477 kb on + strand at 41.477 kb on + strand at 41.478 kb on - strand at 41.478 kb on - strand at 42.268 kb on + strand, within ABID97_RS00170 at 42.431 kb on - strand at 42.469 kb on + strand at 42.469 kb on + strand at 42.469 kb on + strand at 42.469 kb on + strand at 42.470 kb on - strand at 42.479 kb on - strand at 42.611 kb on - strand, within ABID97_RS00175 at 42.721 kb on + strand, within ABID97_RS00175 at 42.827 kb on - strand, within ABID97_RS00175 at 42.841 kb on + strand, within ABID97_RS00175 at 42.841 kb on + strand, within ABID97_RS00175 at 42.842 kb on - strand, within ABID97_RS00175 at 42.851 kb on - strand, within ABID97_RS00175 at 42.851 kb on - strand, within ABID97_RS00175 at 42.877 kb on + strand, within ABID97_RS00175 at 42.878 kb on - strand, within ABID97_RS00175 at 42.878 kb on - strand, within ABID97_RS00175 at 42.952 kb on + strand at 43.030 kb on + strand at 43.030 kb on + strand at 43.031 kb on - strand at 43.031 kb on - strand at 43.039 kb on + strand at 43.039 kb on + strand at 43.040 kb on - strand at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.271 kb on - strand, within ABID97_RS00180 at 43.282 kb on + strand, within ABID97_RS00180 at 43.282 kb on + strand, within ABID97_RS00180 at 43.282 kb on + strand, within ABID97_RS00180 at 43.390 kb on + strand, within ABID97_RS00180 at 43.391 kb on - strand, within ABID97_RS00180 at 43.397 kb on - strand, within ABID97_RS00180 at 43.406 kb on - strand, within ABID97_RS00180 at 43.406 kb on - strand, within ABID97_RS00180 at 43.406 kb on - strand, within ABID97_RS00180
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_pH6 remove 40,604 + ABID97_RS00165 0.56 -0.7 40,604 + ABID97_RS00165 0.56 -0.2 40,604 + ABID97_RS00165 0.56 -0.3 40,604 + ABID97_RS00165 0.56 +0.1 40,646 + ABID97_RS00165 0.58 +0.5 40,647 - ABID97_RS00165 0.58 -0.5 40,769 + ABID97_RS00165 0.64 +0.7 40,769 + ABID97_RS00165 0.64 -1.9 40,769 + ABID97_RS00165 0.64 -0.0 40,769 + ABID97_RS00165 0.64 +1.3 40,770 - ABID97_RS00165 0.64 -0.2 40,826 + ABID97_RS00165 0.67 +1.2 40,826 + ABID97_RS00165 0.67 -0.2 40,865 + ABID97_RS00165 0.69 -0.2 40,865 + ABID97_RS00165 0.69 -0.6 40,865 + ABID97_RS00165 0.69 -0.1 40,865 + ABID97_RS00165 0.69 +0.9 40,866 - ABID97_RS00165 0.69 +0.5 40,911 - ABID97_RS00165 0.71 +0.2 41,115 - ABID97_RS00165 0.81 -0.2 41,115 - ABID97_RS00165 0.81 -0.1 41,172 - ABID97_RS00165 0.83 -0.8 41,172 - ABID97_RS00165 0.83 -0.0 41,210 + ABID97_RS00165 0.85 -0.4 41,384 + -0.5 41,385 - +0.3 41,400 - -0.1 41,472 - +0.2 41,477 + +0.2 41,477 + -0.7 41,478 - +0.1 41,478 - +0.2 42,268 + ABID97_RS00170 0.82 -0.8 42,431 - -0.0 42,469 + +0.5 42,469 + -0.7 42,469 + -0.3 42,469 + +0.1 42,470 - -0.2 42,479 - -0.2 42,611 - ABID97_RS00175 0.34 -0.2 42,721 + ABID97_RS00175 0.54 +0.1 42,827 - ABID97_RS00175 0.73 -0.7 42,841 + ABID97_RS00175 0.76 +0.4 42,841 + ABID97_RS00175 0.76 +0.0 42,842 - ABID97_RS00175 0.76 +0.4 42,851 - ABID97_RS00175 0.78 +0.3 42,851 - ABID97_RS00175 0.78 +0.3 42,877 + ABID97_RS00175 0.83 -0.7 42,878 - ABID97_RS00175 0.83 +0.1 42,878 - ABID97_RS00175 0.83 -0.1 42,952 + +0.4 43,030 + +0.1 43,030 + +0.0 43,031 - -0.2 43,031 - -0.1 43,039 + -0.1 43,039 + -0.9 43,040 - -0.1 43,271 - ABID97_RS00180 0.51 -0.2 43,271 - ABID97_RS00180 0.51 -0.3 43,271 - ABID97_RS00180 0.51 -0.2 43,271 - ABID97_RS00180 0.51 +0.2 43,271 - ABID97_RS00180 0.51 -0.2 43,282 + ABID97_RS00180 0.53 +0.3 43,282 + ABID97_RS00180 0.53 -0.2 43,282 + ABID97_RS00180 0.53 -0.0 43,390 + ABID97_RS00180 0.72 +0.2 43,391 - ABID97_RS00180 0.72 -0.1 43,397 - ABID97_RS00180 0.73 +0.2 43,406 - ABID97_RS00180 0.75 -0.6 43,406 - ABID97_RS00180 0.75 +0.7 43,406 - ABID97_RS00180 0.75 -0.3
Or see this region's nucleotide sequence