Experiment: NLDM_pH5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS09390 and ABID97_RS09395 are separated by 182 nucleotides ABID97_RS09395 and ABID97_RS09400 are separated by 14 nucleotides ABID97_RS09400 and ABID97_RS09405 are separated by 19 nucleotides ABID97_RS09405 and ABID97_RS09410 are separated by 58 nucleotides
ABID97_RS09390: ABID97_RS09390 - helix-turn-helix domain-containing protein, at 1,973,242 to 1,974,381
_RS09390
ABID97_RS09395: ABID97_RS09395 - (2Fe-2S)-binding protein, at 1,974,564 to 1,975,061
_RS09395
ABID97_RS09400: ABID97_RS09400 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 1,975,076 to 1,977,526
_RS09400
ABID97_RS09405: ABID97_RS09405 - xanthine dehydrogenase family protein subunit M, at 1,977,546 to 1,978,337
_RS09405
ABID97_RS09410: ABID97_RS09410 - MoxR family ATPase, at 1,978,396 to 1,979,298
_RS09410
Position (kb) 1975
1976
1977
1978 Strain fitness (log2 ratio) -1
0
1
2 at 1974.490 kb on - strand at 1974.494 kb on + strand at 1974.494 kb on + strand at 1974.494 kb on + strand at 1974.494 kb on + strand at 1974.571 kb on + strand at 1974.572 kb on - strand at 1975.166 kb on + strand at 1975.166 kb on + strand at 1975.167 kb on - strand at 1975.167 kb on - strand at 1975.167 kb on - strand at 1975.167 kb on - strand at 1975.415 kb on + strand, within ABID97_RS09400 at 1975.415 kb on + strand, within ABID97_RS09400 at 1975.416 kb on - strand, within ABID97_RS09400 at 1975.416 kb on - strand, within ABID97_RS09400 at 1975.589 kb on + strand, within ABID97_RS09400 at 1975.721 kb on + strand, within ABID97_RS09400 at 1975.751 kb on + strand, within ABID97_RS09400 at 1975.881 kb on - strand, within ABID97_RS09400 at 1975.881 kb on - strand, within ABID97_RS09400 at 1976.072 kb on + strand, within ABID97_RS09400 at 1976.073 kb on - strand, within ABID97_RS09400 at 1976.135 kb on + strand, within ABID97_RS09400 at 1976.136 kb on - strand, within ABID97_RS09400 at 1976.232 kb on - strand, within ABID97_RS09400 at 1976.349 kb on - strand, within ABID97_RS09400 at 1976.349 kb on - strand, within ABID97_RS09400 at 1976.411 kb on + strand at 1976.412 kb on - strand, within ABID97_RS09400 at 1976.474 kb on + strand, within ABID97_RS09400 at 1976.474 kb on + strand, within ABID97_RS09400 at 1976.475 kb on - strand, within ABID97_RS09400 at 1976.919 kb on - strand, within ABID97_RS09400 at 1976.933 kb on + strand, within ABID97_RS09400 at 1976.978 kb on + strand, within ABID97_RS09400 at 1977.014 kb on + strand, within ABID97_RS09400 at 1977.015 kb on - strand, within ABID97_RS09400 at 1977.180 kb on - strand, within ABID97_RS09400 at 1977.180 kb on - strand, within ABID97_RS09400 at 1977.224 kb on + strand, within ABID97_RS09400 at 1977.225 kb on - strand, within ABID97_RS09400 at 1977.549 kb on + strand at 1977.550 kb on - strand at 1977.802 kb on - strand, within ABID97_RS09405 at 1978.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLDM_pH5 remove 1,974,490 - +0.3 1,974,494 + -0.0 1,974,494 + +0.2 1,974,494 + +0.1 1,974,494 + +0.3 1,974,571 + -0.1 1,974,572 - -0.9 1,975,166 + +0.4 1,975,166 + +1.8 1,975,167 - +0.1 1,975,167 - -0.1 1,975,167 - +0.5 1,975,167 - +0.2 1,975,415 + ABID97_RS09400 0.14 -0.5 1,975,415 + ABID97_RS09400 0.14 +0.1 1,975,416 - ABID97_RS09400 0.14 -0.2 1,975,416 - ABID97_RS09400 0.14 +0.1 1,975,589 + ABID97_RS09400 0.21 +0.9 1,975,721 + ABID97_RS09400 0.26 -0.9 1,975,751 + ABID97_RS09400 0.28 +0.8 1,975,881 - ABID97_RS09400 0.33 -0.7 1,975,881 - ABID97_RS09400 0.33 -0.4 1,976,072 + ABID97_RS09400 0.41 +1.7 1,976,073 - ABID97_RS09400 0.41 +0.3 1,976,135 + ABID97_RS09400 0.43 -1.1 1,976,136 - ABID97_RS09400 0.43 +0.7 1,976,232 - ABID97_RS09400 0.47 +0.3 1,976,349 - ABID97_RS09400 0.52 -0.1 1,976,349 - ABID97_RS09400 0.52 +0.1 1,976,411 + -0.3 1,976,412 - ABID97_RS09400 0.55 +2.5 1,976,474 + ABID97_RS09400 0.57 -0.2 1,976,474 + ABID97_RS09400 0.57 -0.4 1,976,475 - ABID97_RS09400 0.57 +0.9 1,976,919 - ABID97_RS09400 0.75 +0.7 1,976,933 + ABID97_RS09400 0.76 +1.5 1,976,978 + ABID97_RS09400 0.78 -0.9 1,977,014 + ABID97_RS09400 0.79 -0.5 1,977,015 - ABID97_RS09400 0.79 +1.2 1,977,180 - ABID97_RS09400 0.86 +0.5 1,977,180 - ABID97_RS09400 0.86 +0.5 1,977,224 + ABID97_RS09400 0.88 +0.5 1,977,225 - ABID97_RS09400 0.88 +0.3 1,977,549 + +1.4 1,977,550 - -0.2 1,977,802 - ABID97_RS09405 0.32 +0.1 1,978,447 + -0.0
Or see this region's nucleotide sequence