Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_r00009 and ECD_t00060 are separated by 183 nucleotides ECD_t00060 and ECD_t00061 are separated by 42 nucleotides ECD_t00061 and ECD_r00010 are separated by 68 nucleotides ECD_r00010 and ECD_03130 are separated by 473 nucleotides
ECD_r00009: ECD_r00009 - 23S ribosomal RNA, at 3,285,037 to 3,287,944
_r00009
ECD_t00060: ECD_t00060 - tRNA-Ala, at 3,288,128 to 3,288,203
_t00060
ECD_t00061: ECD_t00061 - tRNA-Ile, at 3,288,246 to 3,288,322
_t00061
ECD_r00010: ECD_r00010 - 16S ribosomal RNA, at 3,288,391 to 3,289,932
_r00010
ECD_03130: ECD_03130 - bacterial transferase hexapeptide domain protein, at 3,290,406 to 3,290,960
_03130
Position (kb)
3288
3289
3290 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3290.231 kb on - strand at 3290.231 kb on - strand at 3290.338 kb on + strand at 3290.339 kb on - strand at 3290.390 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.405 kb on + strand at 3290.406 kb on - strand at 3290.419 kb on + strand at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.551 kb on + strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.552 kb on - strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.556 kb on + strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.557 kb on - strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.560 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.597 kb on + strand, within ECD_03130 at 3290.598 kb on - strand, within ECD_03130 at 3290.616 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.626 kb on - strand, within ECD_03130 at 3290.756 kb on - strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.758 kb on + strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.759 kb on - strand, within ECD_03130 at 3290.786 kb on + strand, within ECD_03130 at 3290.829 kb on + strand, within ECD_03130 at 3290.830 kb on - strand, within ECD_03130 at 3290.892 kb on + strand, within ECD_03130 at 3290.907 kb on + strand at 3290.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,290,231 - +0.6 3,290,231 - -0.4 3,290,338 + -0.6 3,290,339 - +0.5 3,290,390 + -0.2 3,290,405 + -0.1 3,290,405 + -0.4 3,290,405 + +0.2 3,290,405 + -0.9 3,290,406 - -0.1 3,290,419 + -1.1 3,290,551 + ECD_03130 0.26 +0.1 3,290,551 + ECD_03130 0.26 -0.0 3,290,551 + ECD_03130 0.26 -0.9 3,290,551 + ECD_03130 0.26 -0.4 3,290,552 - ECD_03130 0.26 -1.3 3,290,552 - ECD_03130 0.26 -0.2 3,290,552 - ECD_03130 0.26 -1.2 3,290,552 - ECD_03130 0.26 +0.2 3,290,552 - ECD_03130 0.26 -0.9 3,290,556 + ECD_03130 0.27 -2.3 3,290,556 + ECD_03130 0.27 -0.0 3,290,556 + ECD_03130 0.27 +4.7 3,290,556 + ECD_03130 0.27 -1.6 3,290,556 + ECD_03130 0.27 +0.7 3,290,556 + ECD_03130 0.27 -0.0 3,290,557 - ECD_03130 0.27 +0.5 3,290,557 - ECD_03130 0.27 +0.1 3,290,557 - ECD_03130 0.27 +0.6 3,290,557 - ECD_03130 0.27 +0.4 3,290,560 + ECD_03130 0.28 -0.9 3,290,560 + ECD_03130 0.28 -1.0 3,290,597 + ECD_03130 0.34 +0.6 3,290,597 + ECD_03130 0.34 -0.3 3,290,598 - ECD_03130 0.35 +0.6 3,290,616 - ECD_03130 0.38 +0.7 3,290,626 - ECD_03130 0.40 +0.4 3,290,626 - ECD_03130 0.40 +0.4 3,290,756 - ECD_03130 0.63 +0.9 3,290,758 + ECD_03130 0.63 +0.2 3,290,758 + ECD_03130 0.63 +0.2 3,290,759 - ECD_03130 0.64 -1.5 3,290,759 - ECD_03130 0.64 -1.1 3,290,786 + ECD_03130 0.68 +0.1 3,290,829 + ECD_03130 0.76 +0.3 3,290,830 - ECD_03130 0.76 -0.8 3,290,892 + ECD_03130 0.88 -1.2 3,290,907 + +0.3 3,290,908 - -0.1
Or see this region's nucleotide sequence