Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04162 and ECD_04163 are separated by 82 nucleotides ECD_04163 and ECD_04164 overlap by 82 nucleotides ECD_04164 and ECD_04165 are separated by 189 nucleotides
ECD_04162: ECD_04162 - hypothetical protein, at 4,433,346 to 4,433,639
_04162
ECD_04163: ECD_04163 - IS1 protein InsB, at 4,433,722 to 4,434,225
_04163
ECD_04164: ECD_04164 - IS1 protein InsA, at 4,434,144 to 4,434,419
_04164
ECD_04165: ECD_04165 - putative DNA-binding transcriptional regulator, at 4,434,609 to 4,435,391
_04165
Position (kb)
4433
4434 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.409 kb on + strand at 4432.410 kb on - strand at 4432.410 kb on - strand at 4432.410 kb on - strand at 4432.433 kb on + strand at 4432.479 kb on - strand at 4432.545 kb on + strand at 4432.619 kb on + strand at 4432.656 kb on - strand at 4432.661 kb on - strand at 4432.666 kb on + strand at 4432.683 kb on + strand at 4432.683 kb on + strand at 4432.684 kb on - strand at 4432.687 kb on + strand at 4432.687 kb on + strand at 4432.724 kb on - strand at 4432.886 kb on - strand at 4432.910 kb on + strand at 4432.946 kb on + strand at 4433.083 kb on + strand at 4433.083 kb on + strand at 4433.326 kb on + strand at 4434.495 kb on + strand at 4434.495 kb on + strand at 4434.495 kb on + strand at 4434.607 kb on + strand at 4434.607 kb on + strand at 4434.608 kb on - strand at 4434.615 kb on + strand at 4434.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 4,432,409 + -0.1 4,432,409 + +0.3 4,432,409 + -1.0 4,432,409 + -0.2 4,432,410 - +1.2 4,432,410 - +0.6 4,432,410 - -0.0 4,432,433 + -1.0 4,432,479 - +0.2 4,432,545 + -0.1 4,432,619 + +0.7 4,432,656 - +0.9 4,432,661 - -0.8 4,432,666 + +3.7 4,432,683 + +0.7 4,432,683 + -0.7 4,432,684 - +0.8 4,432,687 + +0.0 4,432,687 + -0.3 4,432,724 - +0.1 4,432,886 - +1.4 4,432,910 + +0.2 4,432,946 + -0.4 4,433,083 + +0.1 4,433,083 + +0.4 4,433,326 + -1.2 4,434,495 + +1.1 4,434,495 + +0.4 4,434,495 + -1.3 4,434,607 + +0.1 4,434,607 + -1.2 4,434,608 - +0.0 4,434,615 + -0.5 4,434,627 + +0.4
Or see this region's nucleotide sequence