Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04157 and ECD_04158 are separated by 86 nucleotides ECD_04158 and ECD_04159 overlap by 4 nucleotides ECD_04159 and ECD_04160 are separated by 291 nucleotides
ECD_04157: ECD_04157 - TonB-dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR-interacting protein, at 4,427,750 to 4,430,074
_04157
ECD_04158: ECD_04158 - anti-sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA-bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator, at 4,430,161 to 4,431,114
_04158
ECD_04159: ECD_04159 - RNA polymerase sigma-19 factor, fec operon-specific; ECF sigma factor, at 4,431,111 to 4,431,632
_04159
ECD_04160: ECD_04160 - IS1 protein InsA, at 4,431,924 to 4,432,199
_04160
Position (kb) 4430
4431
4432 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 4429.607 kb on + strand, within ECD_04157 at 4429.608 kb on - strand, within ECD_04157 at 4429.608 kb on - strand, within ECD_04157 at 4429.608 kb on - strand, within ECD_04157 at 4429.686 kb on - strand, within ECD_04157 at 4429.775 kb on - strand, within ECD_04157 at 4429.778 kb on - strand, within ECD_04157 at 4429.907 kb on - strand at 4429.964 kb on - strand at 4429.966 kb on + strand at 4430.074 kb on + strand at 4430.075 kb on - strand at 4430.075 kb on - strand at 4430.108 kb on + strand at 4430.108 kb on + strand at 4430.109 kb on - strand at 4430.129 kb on - strand at 4430.397 kb on + strand, within ECD_04158 at 4430.397 kb on + strand, within ECD_04158 at 4430.397 kb on + strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.644 kb on - strand, within ECD_04158 at 4430.857 kb on + strand, within ECD_04158 at 4430.857 kb on + strand, within ECD_04158 at 4430.996 kb on + strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4430.997 kb on - strand, within ECD_04158 at 4431.047 kb on - strand at 4431.057 kb on - strand at 4431.121 kb on + strand at 4431.121 kb on + strand at 4431.217 kb on + strand, within ECD_04159 at 4431.218 kb on - strand, within ECD_04159 at 4431.300 kb on + strand, within ECD_04159 at 4431.301 kb on - strand, within ECD_04159 at 4431.376 kb on + strand, within ECD_04159 at 4431.583 kb on + strand at 4431.614 kb on + strand at 4431.652 kb on - strand at 4431.663 kb on - strand at 4431.669 kb on - strand at 4431.672 kb on - strand at 4431.754 kb on + strand at 4431.759 kb on + strand at 4431.829 kb on + strand at 4431.829 kb on + strand at 4431.830 kb on - strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.898 kb on + strand at 4431.899 kb on - strand at 4431.899 kb on - strand at 4431.912 kb on + strand at 4432.012 kb on - strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160 at 4432.045 kb on + strand, within ECD_04160
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 4,429,607 + ECD_04157 0.80 +0.2 4,429,608 - ECD_04157 0.80 -0.9 4,429,608 - ECD_04157 0.80 -0.3 4,429,608 - ECD_04157 0.80 +0.4 4,429,686 - ECD_04157 0.83 +4.3 4,429,775 - ECD_04157 0.87 -0.0 4,429,778 - ECD_04157 0.87 -0.2 4,429,907 - +1.1 4,429,964 - -1.7 4,429,966 + +0.3 4,430,074 + +1.2 4,430,075 - -0.1 4,430,075 - -0.5 4,430,108 + +0.1 4,430,108 + -1.9 4,430,109 - +0.6 4,430,129 - -0.6 4,430,397 + ECD_04158 0.25 +0.5 4,430,397 + ECD_04158 0.25 -0.9 4,430,397 + ECD_04158 0.25 -0.7 4,430,644 - ECD_04158 0.51 +1.4 4,430,644 - ECD_04158 0.51 +0.9 4,430,644 - ECD_04158 0.51 +1.7 4,430,644 - ECD_04158 0.51 -0.0 4,430,857 + ECD_04158 0.73 +0.1 4,430,857 + ECD_04158 0.73 +0.7 4,430,996 + ECD_04158 0.88 -0.2 4,430,997 - ECD_04158 0.88 +0.5 4,430,997 - ECD_04158 0.88 -0.1 4,430,997 - ECD_04158 0.88 +0.5 4,431,047 - +0.1 4,431,057 - -0.2 4,431,121 + +0.2 4,431,121 + +1.4 4,431,217 + ECD_04159 0.20 +0.5 4,431,218 - ECD_04159 0.20 +0.0 4,431,300 + ECD_04159 0.36 -0.8 4,431,301 - ECD_04159 0.36 +0.6 4,431,376 + ECD_04159 0.51 +1.7 4,431,583 + +6.1 4,431,614 + -0.3 4,431,652 - -0.4 4,431,663 - -0.6 4,431,669 - +0.1 4,431,672 - -0.5 4,431,754 + -0.1 4,431,759 + +0.8 4,431,829 + +0.6 4,431,829 + +1.8 4,431,830 - +1.7 4,431,898 + -0.8 4,431,898 + -1.1 4,431,898 + +0.5 4,431,898 + -0.2 4,431,899 - -0.4 4,431,899 - -0.2 4,431,912 + +1.1 4,432,012 - ECD_04160 0.32 -0.7 4,432,045 + ECD_04160 0.44 -2.1 4,432,045 + ECD_04160 0.44 -0.4 4,432,045 + ECD_04160 0.44 +0.2 4,432,045 + ECD_04160 0.44 -1.2
Or see this region's nucleotide sequence