Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04149 and ECD_04150 are separated by 35 nucleotides ECD_04150 and ECD_04152 are separated by 777 nucleotides
ECD_04149: ECD_04149 - IS600 ORF2-like protein, at 4,421,183 to 4,422,001
_04149
ECD_04150: ECD_04150 - IS600 ORF1-like protein, at 4,422,037 to 4,422,339
_04150
ECD_04152: ECD_04152 - hypothetical protein, at 4,423,117 to 4,423,530
_04152
Position (kb)
4422
4423 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4421.071 kb on + strand at 4421.071 kb on + strand at 4421.074 kb on + strand at 4421.074 kb on + strand at 4421.074 kb on + strand at 4421.074 kb on + strand at 4421.074 kb on + strand at 4421.075 kb on - strand at 4421.106 kb on + strand at 4421.202 kb on + strand at 4421.280 kb on + strand, within ECD_04149 at 4421.291 kb on + strand, within ECD_04149 at 4421.317 kb on + strand, within ECD_04149 at 4421.385 kb on + strand, within ECD_04149 at 4421.386 kb on - strand, within ECD_04149 at 4421.435 kb on + strand, within ECD_04149 at 4421.489 kb on + strand, within ECD_04149 at 4421.536 kb on + strand, within ECD_04149 at 4421.536 kb on + strand, within ECD_04149 at 4421.536 kb on + strand, within ECD_04149 at 4421.593 kb on + strand, within ECD_04149 at 4421.594 kb on - strand, within ECD_04149 at 4421.594 kb on - strand, within ECD_04149 at 4421.594 kb on - strand, within ECD_04149 at 4421.619 kb on + strand, within ECD_04149 at 4421.619 kb on + strand, within ECD_04149 at 4421.646 kb on + strand, within ECD_04149 at 4421.646 kb on + strand, within ECD_04149 at 4421.646 kb on + strand, within ECD_04149 at 4421.647 kb on - strand, within ECD_04149 at 4421.647 kb on - strand, within ECD_04149 at 4421.647 kb on - strand, within ECD_04149 at 4421.647 kb on - strand, within ECD_04149 at 4421.647 kb on - strand, within ECD_04149 at 4421.647 kb on - strand, within ECD_04149 at 4421.784 kb on - strand, within ECD_04149 at 4421.784 kb on - strand, within ECD_04149 at 4421.867 kb on + strand, within ECD_04149 at 4421.869 kb on - strand, within ECD_04149 at 4421.869 kb on - strand, within ECD_04149 at 4421.887 kb on + strand, within ECD_04149 at 4421.899 kb on + strand, within ECD_04149 at 4421.900 kb on - strand, within ECD_04149 at 4421.955 kb on - strand at 4421.964 kb on + strand at 4421.965 kb on - strand at 4421.965 kb on - strand at 4421.991 kb on - strand at 4422.073 kb on + strand, within ECD_04150 at 4422.091 kb on + strand, within ECD_04150 at 4422.093 kb on + strand, within ECD_04150 at 4422.093 kb on + strand, within ECD_04150 at 4422.093 kb on + strand, within ECD_04150 at 4422.093 kb on + strand, within ECD_04150 at 4422.094 kb on - strand, within ECD_04150 at 4422.217 kb on + strand, within ECD_04150 at 4422.317 kb on + strand at 4422.317 kb on + strand at 4422.317 kb on + strand at 4422.317 kb on + strand at 4422.318 kb on - strand at 4422.340 kb on + strand at 4422.340 kb on + strand at 4422.341 kb on - strand at 4422.344 kb on - strand at 4422.897 kb on - strand at 4422.920 kb on - strand at 4422.948 kb on - strand at 4423.035 kb on + strand at 4423.036 kb on - strand at 4423.036 kb on - strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.039 kb on + strand at 4423.040 kb on - strand at 4423.040 kb on - strand at 4423.075 kb on - strand at 4423.075 kb on - strand at 4423.077 kb on - strand at 4423.089 kb on + strand at 4423.113 kb on + strand at 4423.113 kb on + strand at 4423.115 kb on + strand at 4423.115 kb on + strand at 4423.185 kb on - strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.202 kb on + strand, within ECD_04152 at 4423.203 kb on - strand, within ECD_04152 at 4423.238 kb on + strand, within ECD_04152 at 4423.263 kb on - strand, within ECD_04152 at 4423.263 kb on - strand, within ECD_04152
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 4,421,071 + -1.1 4,421,071 + +1.1 4,421,074 + -0.4 4,421,074 + +1.8 4,421,074 + +1.0 4,421,074 + +1.0 4,421,074 + -0.5 4,421,075 - +0.6 4,421,106 + +0.8 4,421,202 + +0.8 4,421,280 + ECD_04149 0.12 -0.5 4,421,291 + ECD_04149 0.13 -0.7 4,421,317 + ECD_04149 0.16 -1.7 4,421,385 + ECD_04149 0.25 -1.2 4,421,386 - ECD_04149 0.25 +0.3 4,421,435 + ECD_04149 0.31 +1.5 4,421,489 + ECD_04149 0.37 +1.7 4,421,536 + ECD_04149 0.43 +0.5 4,421,536 + ECD_04149 0.43 -1.2 4,421,536 + ECD_04149 0.43 +0.8 4,421,593 + ECD_04149 0.50 +0.4 4,421,594 - ECD_04149 0.50 +0.5 4,421,594 - ECD_04149 0.50 -0.2 4,421,594 - ECD_04149 0.50 -0.2 4,421,619 + ECD_04149 0.53 -0.2 4,421,619 + ECD_04149 0.53 -0.7 4,421,646 + ECD_04149 0.57 +1.4 4,421,646 + ECD_04149 0.57 -0.2 4,421,646 + ECD_04149 0.57 +0.4 4,421,647 - ECD_04149 0.57 -0.4 4,421,647 - ECD_04149 0.57 +1.1 4,421,647 - ECD_04149 0.57 -0.0 4,421,647 - ECD_04149 0.57 -0.9 4,421,647 - ECD_04149 0.57 +0.0 4,421,647 - ECD_04149 0.57 -0.4 4,421,784 - ECD_04149 0.73 -0.9 4,421,784 - ECD_04149 0.73 +0.7 4,421,867 + ECD_04149 0.84 -0.5 4,421,869 - ECD_04149 0.84 -0.3 4,421,869 - ECD_04149 0.84 -0.2 4,421,887 + ECD_04149 0.86 +0.7 4,421,899 + ECD_04149 0.87 -0.5 4,421,900 - ECD_04149 0.88 -0.0 4,421,955 - -2.5 4,421,964 + +0.1 4,421,965 - +0.3 4,421,965 - +0.9 4,421,991 - +5.3 4,422,073 + ECD_04150 0.12 -0.2 4,422,091 + ECD_04150 0.18 -0.5 4,422,093 + ECD_04150 0.18 -0.4 4,422,093 + ECD_04150 0.18 -0.8 4,422,093 + ECD_04150 0.18 -0.1 4,422,093 + ECD_04150 0.18 +4.4 4,422,094 - ECD_04150 0.19 -0.0 4,422,217 + ECD_04150 0.59 +0.3 4,422,317 + -0.8 4,422,317 + -0.3 4,422,317 + +0.8 4,422,317 + +0.7 4,422,318 - -0.1 4,422,340 + -2.7 4,422,340 + -0.0 4,422,341 - -0.7 4,422,344 - +1.0 4,422,897 - +0.8 4,422,920 - -0.2 4,422,948 - -1.2 4,423,035 + +0.2 4,423,036 - -1.8 4,423,036 - +2.3 4,423,039 + -0.6 4,423,039 + +0.6 4,423,039 + -0.1 4,423,039 + +0.2 4,423,039 + +0.8 4,423,039 + -1.3 4,423,040 - +0.2 4,423,040 - -0.2 4,423,075 - -0.4 4,423,075 - -0.1 4,423,077 - +1.3 4,423,089 + -0.3 4,423,113 + +0.3 4,423,113 + -0.1 4,423,115 + -0.6 4,423,115 + -0.3 4,423,185 - ECD_04152 0.16 +1.5 4,423,202 + ECD_04152 0.21 +0.3 4,423,202 + ECD_04152 0.21 +0.5 4,423,202 + ECD_04152 0.21 -0.5 4,423,203 - ECD_04152 0.21 -1.6 4,423,238 + ECD_04152 0.29 -0.4 4,423,263 - ECD_04152 0.35 -0.3 4,423,263 - ECD_04152 0.35 +0.4
Or see this region's nucleotide sequence