Strain Fitness in Escherichia coli BL21 around ECD_04150

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04149 and ECD_04150 are separated by 35 nucleotidesECD_04150 and ECD_04152 are separated by 777 nucleotides ECD_04149: ECD_04149 - IS600 ORF2-like protein, at 4,421,183 to 4,422,001 _04149 ECD_04150: ECD_04150 - IS600 ORF1-like protein, at 4,422,037 to 4,422,339 _04150 ECD_04152: ECD_04152 - hypothetical protein, at 4,423,117 to 4,423,530 _04152 Position (kb) 4422 4423Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4421.071 kb on + strandat 4421.071 kb on + strandat 4421.074 kb on + strandat 4421.074 kb on + strandat 4421.074 kb on + strandat 4421.074 kb on + strandat 4421.074 kb on + strandat 4421.075 kb on - strandat 4421.106 kb on + strandat 4421.202 kb on + strandat 4421.280 kb on + strand, within ECD_04149at 4421.291 kb on + strand, within ECD_04149at 4421.317 kb on + strand, within ECD_04149at 4421.385 kb on + strand, within ECD_04149at 4421.386 kb on - strand, within ECD_04149at 4421.435 kb on + strand, within ECD_04149at 4421.489 kb on + strand, within ECD_04149at 4421.536 kb on + strand, within ECD_04149at 4421.536 kb on + strand, within ECD_04149at 4421.536 kb on + strand, within ECD_04149at 4421.593 kb on + strand, within ECD_04149at 4421.594 kb on - strand, within ECD_04149at 4421.594 kb on - strand, within ECD_04149at 4421.594 kb on - strand, within ECD_04149at 4421.619 kb on + strand, within ECD_04149at 4421.619 kb on + strand, within ECD_04149at 4421.646 kb on + strand, within ECD_04149at 4421.646 kb on + strand, within ECD_04149at 4421.646 kb on + strand, within ECD_04149at 4421.647 kb on - strand, within ECD_04149at 4421.647 kb on - strand, within ECD_04149at 4421.647 kb on - strand, within ECD_04149at 4421.647 kb on - strand, within ECD_04149at 4421.647 kb on - strand, within ECD_04149at 4421.647 kb on - strand, within ECD_04149at 4421.784 kb on - strand, within ECD_04149at 4421.784 kb on - strand, within ECD_04149at 4421.867 kb on + strand, within ECD_04149at 4421.869 kb on - strand, within ECD_04149at 4421.869 kb on - strand, within ECD_04149at 4421.887 kb on + strand, within ECD_04149at 4421.899 kb on + strand, within ECD_04149at 4421.900 kb on - strand, within ECD_04149at 4421.955 kb on - strandat 4421.964 kb on + strandat 4421.965 kb on - strandat 4421.965 kb on - strandat 4421.991 kb on - strandat 4422.073 kb on + strand, within ECD_04150at 4422.091 kb on + strand, within ECD_04150at 4422.093 kb on + strand, within ECD_04150at 4422.093 kb on + strand, within ECD_04150at 4422.093 kb on + strand, within ECD_04150at 4422.093 kb on + strand, within ECD_04150at 4422.094 kb on - strand, within ECD_04150at 4422.217 kb on + strand, within ECD_04150at 4422.317 kb on + strandat 4422.317 kb on + strandat 4422.317 kb on + strandat 4422.317 kb on + strandat 4422.318 kb on - strandat 4422.340 kb on + strandat 4422.340 kb on + strandat 4422.341 kb on - strandat 4422.344 kb on - strandat 4422.897 kb on - strandat 4422.920 kb on - strandat 4422.948 kb on - strandat 4423.035 kb on + strandat 4423.036 kb on - strandat 4423.036 kb on - strandat 4423.039 kb on + strandat 4423.039 kb on + strandat 4423.039 kb on + strandat 4423.039 kb on + strandat 4423.039 kb on + strandat 4423.039 kb on + strandat 4423.040 kb on - strandat 4423.040 kb on - strandat 4423.075 kb on - strandat 4423.075 kb on - strandat 4423.077 kb on - strandat 4423.089 kb on + strandat 4423.113 kb on + strandat 4423.113 kb on + strandat 4423.115 kb on + strandat 4423.115 kb on + strandat 4423.185 kb on - strand, within ECD_04152at 4423.202 kb on + strand, within ECD_04152at 4423.202 kb on + strand, within ECD_04152at 4423.202 kb on + strand, within ECD_04152at 4423.203 kb on - strand, within ECD_04152at 4423.238 kb on + strand, within ECD_04152at 4423.263 kb on - strand, within ECD_04152at 4423.263 kb on - strand, within ECD_04152

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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4,421,071 + -1.1
4,421,071 + +1.1
4,421,074 + -0.4
4,421,074 + +1.8
4,421,074 + +1.0
4,421,074 + +1.0
4,421,074 + -0.5
4,421,075 - +0.6
4,421,106 + +0.8
4,421,202 + +0.8
4,421,280 + ECD_04149 0.12 -0.5
4,421,291 + ECD_04149 0.13 -0.7
4,421,317 + ECD_04149 0.16 -1.7
4,421,385 + ECD_04149 0.25 -1.2
4,421,386 - ECD_04149 0.25 +0.3
4,421,435 + ECD_04149 0.31 +1.5
4,421,489 + ECD_04149 0.37 +1.7
4,421,536 + ECD_04149 0.43 +0.5
4,421,536 + ECD_04149 0.43 -1.2
4,421,536 + ECD_04149 0.43 +0.8
4,421,593 + ECD_04149 0.50 +0.4
4,421,594 - ECD_04149 0.50 +0.5
4,421,594 - ECD_04149 0.50 -0.2
4,421,594 - ECD_04149 0.50 -0.2
4,421,619 + ECD_04149 0.53 -0.2
4,421,619 + ECD_04149 0.53 -0.7
4,421,646 + ECD_04149 0.57 +1.4
4,421,646 + ECD_04149 0.57 -0.2
4,421,646 + ECD_04149 0.57 +0.4
4,421,647 - ECD_04149 0.57 -0.4
4,421,647 - ECD_04149 0.57 +1.1
4,421,647 - ECD_04149 0.57 -0.0
4,421,647 - ECD_04149 0.57 -0.9
4,421,647 - ECD_04149 0.57 +0.0
4,421,647 - ECD_04149 0.57 -0.4
4,421,784 - ECD_04149 0.73 -0.9
4,421,784 - ECD_04149 0.73 +0.7
4,421,867 + ECD_04149 0.84 -0.5
4,421,869 - ECD_04149 0.84 -0.3
4,421,869 - ECD_04149 0.84 -0.2
4,421,887 + ECD_04149 0.86 +0.7
4,421,899 + ECD_04149 0.87 -0.5
4,421,900 - ECD_04149 0.88 -0.0
4,421,955 - -2.5
4,421,964 + +0.1
4,421,965 - +0.3
4,421,965 - +0.9
4,421,991 - +5.3
4,422,073 + ECD_04150 0.12 -0.2
4,422,091 + ECD_04150 0.18 -0.5
4,422,093 + ECD_04150 0.18 -0.4
4,422,093 + ECD_04150 0.18 -0.8
4,422,093 + ECD_04150 0.18 -0.1
4,422,093 + ECD_04150 0.18 +4.4
4,422,094 - ECD_04150 0.19 -0.0
4,422,217 + ECD_04150 0.59 +0.3
4,422,317 + -0.8
4,422,317 + -0.3
4,422,317 + +0.8
4,422,317 + +0.7
4,422,318 - -0.1
4,422,340 + -2.7
4,422,340 + -0.0
4,422,341 - -0.7
4,422,344 - +1.0
4,422,897 - +0.8
4,422,920 - -0.2
4,422,948 - -1.2
4,423,035 + +0.2
4,423,036 - -1.8
4,423,036 - +2.3
4,423,039 + -0.6
4,423,039 + +0.6
4,423,039 + -0.1
4,423,039 + +0.2
4,423,039 + +0.8
4,423,039 + -1.3
4,423,040 - +0.2
4,423,040 - -0.2
4,423,075 - -0.4
4,423,075 - -0.1
4,423,077 - +1.3
4,423,089 + -0.3
4,423,113 + +0.3
4,423,113 + -0.1
4,423,115 + -0.6
4,423,115 + -0.3
4,423,185 - ECD_04152 0.16 +1.5
4,423,202 + ECD_04152 0.21 +0.3
4,423,202 + ECD_04152 0.21 +0.5
4,423,202 + ECD_04152 0.21 -0.5
4,423,203 - ECD_04152 0.21 -1.6
4,423,238 + ECD_04152 0.29 -0.4
4,423,263 - ECD_04152 0.35 -0.3
4,423,263 - ECD_04152 0.35 +0.4

Or see this region's nucleotide sequence