Strain Fitness in Escherichia coli BL21 around ECD_04083

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04082 and ECD_04083 are separated by 108 nucleotidesECD_04083 and ECD_04084 are separated by 88 nucleotidesECD_04084 and ECD_04085 are separated by 122 nucleotides ECD_04082: ECD_04082 - DMT transporter family inner membrane protein, at 4,345,455 to 4,346,420 _04082 ECD_04083: ECD_04083 - NAD(P)H:quinone oxidoreductase, at 4,346,529 to 4,347,389 _04083 ECD_04084: ECD_04084 - DUF24 family HxlR-type putative transcriptional regulator, at 4,347,478 to 4,347,858 _04084 ECD_04085: ECD_04085 - 2':3'-cyclic-nucleotide 2'-phosphodiesterase, at 4,347,981 to 4,349,924 _04085 Position (kb) 4346 4347 4348Strain fitness (log2 ratio) -1 0 1 2at 4345.718 kb on + strand, within ECD_04082at 4345.719 kb on - strand, within ECD_04082at 4345.721 kb on + strand, within ECD_04082at 4345.771 kb on - strand, within ECD_04082at 4345.783 kb on + strand, within ECD_04082at 4345.903 kb on + strand, within ECD_04082at 4345.935 kb on + strand, within ECD_04082at 4345.952 kb on + strand, within ECD_04082at 4345.953 kb on - strand, within ECD_04082at 4345.953 kb on - strand, within ECD_04082at 4346.083 kb on + strand, within ECD_04082at 4346.129 kb on + strand, within ECD_04082at 4346.129 kb on + strand, within ECD_04082at 4346.130 kb on - strand, within ECD_04082at 4346.138 kb on + strand, within ECD_04082at 4346.207 kb on + strand, within ECD_04082at 4346.208 kb on - strand, within ECD_04082at 4346.309 kb on - strand, within ECD_04082at 4346.338 kb on + strandat 4346.392 kb on - strandat 4346.402 kb on - strandat 4346.402 kb on - strandat 4346.527 kb on - strandat 4346.531 kb on - strandat 4346.663 kb on + strand, within ECD_04083at 4346.738 kb on + strand, within ECD_04083at 4346.739 kb on - strand, within ECD_04083at 4346.739 kb on - strand, within ECD_04083at 4346.923 kb on - strand, within ECD_04083at 4346.971 kb on + strand, within ECD_04083at 4346.971 kb on + strand, within ECD_04083at 4346.996 kb on - strand, within ECD_04083at 4347.086 kb on + strand, within ECD_04083at 4347.088 kb on + strand, within ECD_04083at 4347.128 kb on + strand, within ECD_04083at 4347.134 kb on + strand, within ECD_04083at 4347.134 kb on + strand, within ECD_04083at 4347.233 kb on - strand, within ECD_04083at 4347.300 kb on - strand, within ECD_04083at 4347.306 kb on + strandat 4347.307 kb on - strandat 4347.341 kb on + strandat 4347.341 kb on + strandat 4347.342 kb on - strandat 4347.349 kb on + strandat 4347.349 kb on + strandat 4347.349 kb on + strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.350 kb on - strandat 4347.419 kb on + strandat 4347.423 kb on + strandat 4347.424 kb on - strandat 4347.468 kb on + strandat 4347.609 kb on + strand, within ECD_04084at 4347.610 kb on - strand, within ECD_04084at 4347.686 kb on + strand, within ECD_04084at 4347.745 kb on + strand, within ECD_04084at 4347.856 kb on + strandat 4347.898 kb on + strandat 4347.960 kb on - strandat 4347.980 kb on - strandat 4347.980 kb on - strandat 4347.982 kb on + strandat 4347.982 kb on + strandat 4347.983 kb on - strandat 4348.003 kb on + strandat 4348.049 kb on - strandat 4348.082 kb on + strandat 4348.155 kb on - strandat 4348.294 kb on + strand, within ECD_04085at 4348.294 kb on + strand, within ECD_04085at 4348.298 kb on + strand, within ECD_04085at 4348.361 kb on + strand, within ECD_04085

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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4,345,718 + ECD_04082 0.27 -0.4
4,345,719 - ECD_04082 0.27 +0.7
4,345,721 + ECD_04082 0.28 -0.5
4,345,771 - ECD_04082 0.33 +1.6
4,345,783 + ECD_04082 0.34 +2.3
4,345,903 + ECD_04082 0.46 +0.4
4,345,935 + ECD_04082 0.50 +0.1
4,345,952 + ECD_04082 0.51 +0.2
4,345,953 - ECD_04082 0.52 +0.7
4,345,953 - ECD_04082 0.52 -0.4
4,346,083 + ECD_04082 0.65 +1.2
4,346,129 + ECD_04082 0.70 +0.6
4,346,129 + ECD_04082 0.70 +1.5
4,346,130 - ECD_04082 0.70 +0.6
4,346,138 + ECD_04082 0.71 +0.6
4,346,207 + ECD_04082 0.78 -0.0
4,346,208 - ECD_04082 0.78 +0.1
4,346,309 - ECD_04082 0.88 +0.5
4,346,338 + +1.1
4,346,392 - +0.5
4,346,402 - -0.1
4,346,402 - -0.1
4,346,527 - +0.3
4,346,531 - +0.8
4,346,663 + ECD_04083 0.16 +1.2
4,346,738 + ECD_04083 0.24 -0.0
4,346,739 - ECD_04083 0.24 +0.4
4,346,739 - ECD_04083 0.24 +2.0
4,346,923 - ECD_04083 0.46 -0.3
4,346,971 + ECD_04083 0.51 +0.1
4,346,971 + ECD_04083 0.51 -0.4
4,346,996 - ECD_04083 0.54 +0.7
4,347,086 + ECD_04083 0.65 +0.9
4,347,088 + ECD_04083 0.65 +1.0
4,347,128 + ECD_04083 0.70 +1.1
4,347,134 + ECD_04083 0.70 -0.9
4,347,134 + ECD_04083 0.70 +0.1
4,347,233 - ECD_04083 0.82 +1.2
4,347,300 - ECD_04083 0.90 +0.7
4,347,306 + +0.8
4,347,307 - -0.4
4,347,341 + +1.4
4,347,341 + +0.5
4,347,342 - +0.3
4,347,349 + -1.4
4,347,349 + -1.4
4,347,349 + +0.9
4,347,350 - -0.9
4,347,350 - +0.6
4,347,350 - -0.4
4,347,350 - -0.2
4,347,350 - +1.3
4,347,419 + -1.0
4,347,423 + +0.2
4,347,424 - +0.3
4,347,468 + -1.2
4,347,609 + ECD_04084 0.34 -1.3
4,347,610 - ECD_04084 0.35 +2.4
4,347,686 + ECD_04084 0.55 +0.2
4,347,745 + ECD_04084 0.70 -0.2
4,347,856 + -1.5
4,347,898 + -0.6
4,347,960 - +0.2
4,347,980 - +0.2
4,347,980 - +0.9
4,347,982 + +0.7
4,347,982 + +1.4
4,347,983 - +0.5
4,348,003 + -0.1
4,348,049 - +1.0
4,348,082 + -0.1
4,348,155 - +0.3
4,348,294 + ECD_04085 0.16 +2.4
4,348,294 + ECD_04085 0.16 -0.7
4,348,298 + ECD_04085 0.16 -0.3
4,348,361 + ECD_04085 0.20 +0.4

Or see this region's nucleotide sequence