Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03924 and ECD_03925 are separated by 52 nucleotides ECD_03925 and ECD_03926 are separated by 252 nucleotides
ECD_03924: ECD_03924 - replicative DNA helicase, at 4,171,723 to 4,173,138
_03924
ECD_03925: ECD_03925 - alanine racemase, biosynthetic, PLP-binding, at 4,173,191 to 4,174,270
_03925
ECD_03926: ECD_03926 - tyrosine aminotransferase, tyrosine-repressible, PLP-dependent, at 4,174,523 to 4,175,716
_03926
Position (kb)
4173
4174
4175 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4173.110 kb on - strand at 4173.110 kb on - strand at 4173.110 kb on - strand at 4173.139 kb on + strand at 4173.271 kb on + strand at 4173.414 kb on + strand, within ECD_03925 at 4173.414 kb on + strand, within ECD_03925 at 4173.414 kb on + strand, within ECD_03925 at 4173.490 kb on + strand, within ECD_03925 at 4173.493 kb on - strand, within ECD_03925 at 4173.611 kb on + strand, within ECD_03925 at 4173.724 kb on + strand, within ECD_03925 at 4173.724 kb on + strand, within ECD_03925 at 4173.724 kb on + strand, within ECD_03925 at 4173.931 kb on + strand, within ECD_03925 at 4173.931 kb on + strand, within ECD_03925 at 4173.931 kb on + strand, within ECD_03925 at 4173.931 kb on + strand, within ECD_03925 at 4173.953 kb on + strand, within ECD_03925 at 4174.074 kb on + strand, within ECD_03925 at 4174.102 kb on + strand, within ECD_03925 at 4174.102 kb on + strand, within ECD_03925 at 4174.102 kb on + strand, within ECD_03925 at 4174.119 kb on + strand, within ECD_03925 at 4174.119 kb on + strand, within ECD_03925 at 4174.120 kb on - strand, within ECD_03925 at 4174.190 kb on - strand at 4174.228 kb on + strand at 4174.259 kb on + strand at 4174.280 kb on - strand at 4174.373 kb on + strand at 4174.376 kb on - strand at 4174.376 kb on - strand at 4174.399 kb on + strand at 4174.399 kb on + strand at 4174.399 kb on + strand at 4174.399 kb on + strand at 4174.399 kb on + strand at 4174.399 kb on + strand at 4174.399 kb on + strand at 4174.399 kb on + strand at 4174.400 kb on - strand at 4174.429 kb on - strand at 4174.479 kb on + strand at 4174.479 kb on + strand at 4174.564 kb on + strand at 4174.570 kb on + strand at 4174.571 kb on - strand at 4174.571 kb on - strand at 4174.583 kb on - strand at 4174.614 kb on + strand at 4174.614 kb on + strand at 4174.615 kb on - strand at 4174.629 kb on - strand at 4174.649 kb on - strand, within ECD_03926 at 4174.738 kb on + strand, within ECD_03926 at 4174.960 kb on + strand, within ECD_03926 at 4174.960 kb on + strand, within ECD_03926 at 4174.964 kb on + strand, within ECD_03926 at 4174.965 kb on - strand, within ECD_03926 at 4175.032 kb on - strand, within ECD_03926 at 4175.044 kb on + strand, within ECD_03926 at 4175.044 kb on + strand, within ECD_03926 at 4175.044 kb on + strand, within ECD_03926 at 4175.045 kb on - strand, within ECD_03926
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 4,173,110 - -0.7 4,173,110 - -1.4 4,173,110 - +0.1 4,173,139 + -1.2 4,173,271 + -1.5 4,173,414 + ECD_03925 0.21 +0.1 4,173,414 + ECD_03925 0.21 -1.0 4,173,414 + ECD_03925 0.21 -0.8 4,173,490 + ECD_03925 0.28 -0.7 4,173,493 - ECD_03925 0.28 +0.2 4,173,611 + ECD_03925 0.39 -1.1 4,173,724 + ECD_03925 0.49 -1.0 4,173,724 + ECD_03925 0.49 +0.8 4,173,724 + ECD_03925 0.49 -0.3 4,173,931 + ECD_03925 0.69 +1.6 4,173,931 + ECD_03925 0.69 +1.7 4,173,931 + ECD_03925 0.69 -1.1 4,173,931 + ECD_03925 0.69 +1.6 4,173,953 + ECD_03925 0.71 -0.1 4,174,074 + ECD_03925 0.82 +0.2 4,174,102 + ECD_03925 0.84 -0.2 4,174,102 + ECD_03925 0.84 -0.6 4,174,102 + ECD_03925 0.84 +0.1 4,174,119 + ECD_03925 0.86 +0.7 4,174,119 + ECD_03925 0.86 +0.4 4,174,120 - ECD_03925 0.86 -1.4 4,174,190 - -0.3 4,174,228 + -0.3 4,174,259 + +0.6 4,174,280 - -0.2 4,174,373 + +2.0 4,174,376 - +0.3 4,174,376 - -0.1 4,174,399 + -0.4 4,174,399 + -0.5 4,174,399 + -0.5 4,174,399 + +1.3 4,174,399 + -0.1 4,174,399 + +0.3 4,174,399 + -0.4 4,174,399 + -1.0 4,174,400 - +0.5 4,174,429 - +0.1 4,174,479 + +0.7 4,174,479 + +0.1 4,174,564 + -0.1 4,174,570 + +1.2 4,174,571 - +0.3 4,174,571 - -1.8 4,174,583 - -0.6 4,174,614 + -1.6 4,174,614 + -0.1 4,174,615 - +0.2 4,174,629 - +0.2 4,174,649 - ECD_03926 0.11 +0.8 4,174,738 + ECD_03926 0.18 +0.7 4,174,960 + ECD_03926 0.37 +0.2 4,174,960 + ECD_03926 0.37 +0.0 4,174,964 + ECD_03926 0.37 +0.1 4,174,965 - ECD_03926 0.37 -0.5 4,175,032 - ECD_03926 0.43 -0.3 4,175,044 + ECD_03926 0.44 +0.6 4,175,044 + ECD_03926 0.44 -0.0 4,175,044 + ECD_03926 0.44 -0.4 4,175,045 - ECD_03926 0.44 +0.2
Or see this region's nucleotide sequence