Strain Fitness in Escherichia coli BL21 around ECD_03925

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03924 and ECD_03925 are separated by 52 nucleotidesECD_03925 and ECD_03926 are separated by 252 nucleotides ECD_03924: ECD_03924 - replicative DNA helicase, at 4,171,723 to 4,173,138 _03924 ECD_03925: ECD_03925 - alanine racemase, biosynthetic, PLP-binding, at 4,173,191 to 4,174,270 _03925 ECD_03926: ECD_03926 - tyrosine aminotransferase, tyrosine-repressible, PLP-dependent, at 4,174,523 to 4,175,716 _03926 Position (kb) 4173 4174 4175Strain fitness (log2 ratio) -2 -1 0 1 2at 4173.110 kb on - strandat 4173.110 kb on - strandat 4173.110 kb on - strandat 4173.139 kb on + strandat 4173.271 kb on + strandat 4173.414 kb on + strand, within ECD_03925at 4173.414 kb on + strand, within ECD_03925at 4173.414 kb on + strand, within ECD_03925at 4173.490 kb on + strand, within ECD_03925at 4173.493 kb on - strand, within ECD_03925at 4173.611 kb on + strand, within ECD_03925at 4173.724 kb on + strand, within ECD_03925at 4173.724 kb on + strand, within ECD_03925at 4173.724 kb on + strand, within ECD_03925at 4173.931 kb on + strand, within ECD_03925at 4173.931 kb on + strand, within ECD_03925at 4173.931 kb on + strand, within ECD_03925at 4173.931 kb on + strand, within ECD_03925at 4173.953 kb on + strand, within ECD_03925at 4174.074 kb on + strand, within ECD_03925at 4174.102 kb on + strand, within ECD_03925at 4174.102 kb on + strand, within ECD_03925at 4174.102 kb on + strand, within ECD_03925at 4174.119 kb on + strand, within ECD_03925at 4174.119 kb on + strand, within ECD_03925at 4174.120 kb on - strand, within ECD_03925at 4174.190 kb on - strandat 4174.228 kb on + strandat 4174.259 kb on + strandat 4174.280 kb on - strandat 4174.373 kb on + strandat 4174.376 kb on - strandat 4174.376 kb on - strandat 4174.399 kb on + strandat 4174.399 kb on + strandat 4174.399 kb on + strandat 4174.399 kb on + strandat 4174.399 kb on + strandat 4174.399 kb on + strandat 4174.399 kb on + strandat 4174.399 kb on + strandat 4174.400 kb on - strandat 4174.429 kb on - strandat 4174.479 kb on + strandat 4174.479 kb on + strandat 4174.564 kb on + strandat 4174.570 kb on + strandat 4174.571 kb on - strandat 4174.571 kb on - strandat 4174.583 kb on - strandat 4174.614 kb on + strandat 4174.614 kb on + strandat 4174.615 kb on - strandat 4174.629 kb on - strandat 4174.649 kb on - strand, within ECD_03926at 4174.738 kb on + strand, within ECD_03926at 4174.960 kb on + strand, within ECD_03926at 4174.960 kb on + strand, within ECD_03926at 4174.964 kb on + strand, within ECD_03926at 4174.965 kb on - strand, within ECD_03926at 4175.032 kb on - strand, within ECD_03926at 4175.044 kb on + strand, within ECD_03926at 4175.044 kb on + strand, within ECD_03926at 4175.044 kb on + strand, within ECD_03926at 4175.045 kb on - strand, within ECD_03926

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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4,173,110 - -0.7
4,173,110 - -1.4
4,173,110 - +0.1
4,173,139 + -1.2
4,173,271 + -1.5
4,173,414 + ECD_03925 0.21 +0.1
4,173,414 + ECD_03925 0.21 -1.0
4,173,414 + ECD_03925 0.21 -0.8
4,173,490 + ECD_03925 0.28 -0.7
4,173,493 - ECD_03925 0.28 +0.2
4,173,611 + ECD_03925 0.39 -1.1
4,173,724 + ECD_03925 0.49 -1.0
4,173,724 + ECD_03925 0.49 +0.8
4,173,724 + ECD_03925 0.49 -0.3
4,173,931 + ECD_03925 0.69 +1.6
4,173,931 + ECD_03925 0.69 +1.7
4,173,931 + ECD_03925 0.69 -1.1
4,173,931 + ECD_03925 0.69 +1.6
4,173,953 + ECD_03925 0.71 -0.1
4,174,074 + ECD_03925 0.82 +0.2
4,174,102 + ECD_03925 0.84 -0.2
4,174,102 + ECD_03925 0.84 -0.6
4,174,102 + ECD_03925 0.84 +0.1
4,174,119 + ECD_03925 0.86 +0.7
4,174,119 + ECD_03925 0.86 +0.4
4,174,120 - ECD_03925 0.86 -1.4
4,174,190 - -0.3
4,174,228 + -0.3
4,174,259 + +0.6
4,174,280 - -0.2
4,174,373 + +2.0
4,174,376 - +0.3
4,174,376 - -0.1
4,174,399 + -0.4
4,174,399 + -0.5
4,174,399 + -0.5
4,174,399 + +1.3
4,174,399 + -0.1
4,174,399 + +0.3
4,174,399 + -0.4
4,174,399 + -1.0
4,174,400 - +0.5
4,174,429 - +0.1
4,174,479 + +0.7
4,174,479 + +0.1
4,174,564 + -0.1
4,174,570 + +1.2
4,174,571 - +0.3
4,174,571 - -1.8
4,174,583 - -0.6
4,174,614 + -1.6
4,174,614 + -0.1
4,174,615 - +0.2
4,174,629 - +0.2
4,174,649 - ECD_03926 0.11 +0.8
4,174,738 + ECD_03926 0.18 +0.7
4,174,960 + ECD_03926 0.37 +0.2
4,174,960 + ECD_03926 0.37 +0.0
4,174,964 + ECD_03926 0.37 +0.1
4,174,965 - ECD_03926 0.37 -0.5
4,175,032 - ECD_03926 0.43 -0.3
4,175,044 + ECD_03926 0.44 +0.6
4,175,044 + ECD_03926 0.44 -0.0
4,175,044 + ECD_03926 0.44 -0.4
4,175,045 - ECD_03926 0.44 +0.2

Or see this region's nucleotide sequence