Strain Fitness in Escherichia coli BL21 around ECD_03835

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03834 and ECD_03835 are separated by 14 nucleotidesECD_03835 and ECD_03836 are separated by 50 nucleotides ECD_03834: ECD_03834 - putative enzyme IIC component of PTS, at 4,051,077 to 4,052,156 _03834 ECD_03835: ECD_03835 - putative enzyme IIB component of PTS, at 4,052,171 to 4,052,491 _03835 ECD_03836: ECD_03836 - putative glycine radical domain-containing pyruvate formate-lyase, at 4,052,542 to 4,054,839 _03836 Position (kb) 4052 4053Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4051.194 kb on + strand, within ECD_03834at 4051.195 kb on - strand, within ECD_03834at 4051.195 kb on - strand, within ECD_03834at 4051.195 kb on - strand, within ECD_03834at 4051.251 kb on + strand, within ECD_03834at 4051.299 kb on + strand, within ECD_03834at 4051.299 kb on + strand, within ECD_03834at 4051.300 kb on - strand, within ECD_03834at 4051.431 kb on + strand, within ECD_03834at 4051.454 kb on + strand, within ECD_03834at 4051.478 kb on + strand, within ECD_03834at 4051.478 kb on + strand, within ECD_03834at 4051.478 kb on + strand, within ECD_03834at 4051.479 kb on - strand, within ECD_03834at 4051.487 kb on + strand, within ECD_03834at 4051.487 kb on + strand, within ECD_03834at 4051.549 kb on + strand, within ECD_03834at 4051.610 kb on + strand, within ECD_03834at 4051.645 kb on + strand, within ECD_03834at 4051.677 kb on + strand, within ECD_03834at 4051.713 kb on + strand, within ECD_03834at 4051.713 kb on + strand, within ECD_03834at 4051.713 kb on + strand, within ECD_03834at 4051.714 kb on - strand, within ECD_03834at 4051.714 kb on - strand, within ECD_03834at 4051.714 kb on - strand, within ECD_03834at 4051.714 kb on - strand, within ECD_03834at 4051.716 kb on - strand, within ECD_03834at 4051.743 kb on - strand, within ECD_03834at 4051.939 kb on + strand, within ECD_03834at 4051.940 kb on - strand, within ECD_03834at 4051.940 kb on - strand, within ECD_03834at 4051.940 kb on - strand, within ECD_03834at 4051.969 kb on - strand, within ECD_03834at 4051.969 kb on - strand, within ECD_03834at 4052.022 kb on + strand, within ECD_03834at 4052.023 kb on - strand, within ECD_03834at 4052.023 kb on - strand, within ECD_03834at 4052.154 kb on + strandat 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.222 kb on + strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.223 kb on - strand, within ECD_03835at 4052.224 kb on + strand, within ECD_03835at 4052.281 kb on - strand, within ECD_03835at 4052.345 kb on - strand, within ECD_03835at 4052.453 kb on - strand, within ECD_03835at 4052.489 kb on + strandat 4052.490 kb on - strandat 4052.553 kb on + strandat 4052.553 kb on + strandat 4052.554 kb on - strandat 4052.554 kb on - strandat 4052.586 kb on + strandat 4052.620 kb on + strandat 4052.686 kb on + strandat 4052.686 kb on + strandat 4052.687 kb on - strandat 4052.687 kb on - strandat 4052.687 kb on - strandat 4052.687 kb on - strandat 4052.687 kb on - strandat 4052.750 kb on + strandat 4052.769 kb on + strandat 4052.770 kb on - strandat 4052.792 kb on - strand, within ECD_03836at 4052.847 kb on + strand, within ECD_03836at 4052.862 kb on + strand, within ECD_03836at 4052.868 kb on + strand, within ECD_03836at 4052.869 kb on - strand, within ECD_03836at 4052.869 kb on - strand, within ECD_03836at 4052.869 kb on - strand, within ECD_03836at 4052.869 kb on - strand, within ECD_03836at 4052.948 kb on + strand, within ECD_03836at 4052.949 kb on - strand, within ECD_03836at 4052.949 kb on - strand, within ECD_03836at 4052.994 kb on + strand, within ECD_03836at 4052.994 kb on + strand, within ECD_03836at 4052.994 kb on + strand, within ECD_03836at 4052.995 kb on - strand, within ECD_03836at 4052.995 kb on - strand, within ECD_03836at 4053.012 kb on + strand, within ECD_03836at 4053.013 kb on - strand, within ECD_03836at 4053.013 kb on - strand, within ECD_03836at 4053.015 kb on + strand, within ECD_03836at 4053.015 kb on + strand, within ECD_03836at 4053.106 kb on + strand, within ECD_03836at 4053.107 kb on - strand, within ECD_03836at 4053.258 kb on + strand, within ECD_03836at 4053.258 kb on + strand, within ECD_03836at 4053.259 kb on - strand, within ECD_03836at 4053.259 kb on - strand, within ECD_03836at 4053.299 kb on - strand, within ECD_03836at 4053.319 kb on + strand, within ECD_03836at 4053.364 kb on + strand, within ECD_03836at 4053.364 kb on + strand, within ECD_03836at 4053.365 kb on - strand, within ECD_03836at 4053.365 kb on - strand, within ECD_03836at 4053.365 kb on - strand, within ECD_03836at 4053.366 kb on + strand, within ECD_03836at 4053.366 kb on + strand, within ECD_03836at 4053.366 kb on + strand, within ECD_03836at 4053.367 kb on - strand, within ECD_03836at 4053.367 kb on - strand, within ECD_03836at 4053.367 kb on - strand, within ECD_03836at 4053.367 kb on - strand, within ECD_03836at 4053.367 kb on - strand, within ECD_03836at 4053.441 kb on - strand, within ECD_03836

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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4,051,194 + ECD_03834 0.11 -1.3
4,051,195 - ECD_03834 0.11 -1.1
4,051,195 - ECD_03834 0.11 +0.9
4,051,195 - ECD_03834 0.11 -0.4
4,051,251 + ECD_03834 0.16 +0.9
4,051,299 + ECD_03834 0.21 +0.7
4,051,299 + ECD_03834 0.21 +1.5
4,051,300 - ECD_03834 0.21 -1.5
4,051,431 + ECD_03834 0.33 -0.7
4,051,454 + ECD_03834 0.35 -0.1
4,051,478 + ECD_03834 0.37 +0.9
4,051,478 + ECD_03834 0.37 -0.4
4,051,478 + ECD_03834 0.37 +0.1
4,051,479 - ECD_03834 0.37 +0.7
4,051,487 + ECD_03834 0.38 -1.7
4,051,487 + ECD_03834 0.38 +1.0
4,051,549 + ECD_03834 0.44 -0.6
4,051,610 + ECD_03834 0.49 +0.5
4,051,645 + ECD_03834 0.53 -1.6
4,051,677 + ECD_03834 0.56 -0.6
4,051,713 + ECD_03834 0.59 +0.6
4,051,713 + ECD_03834 0.59 +0.4
4,051,713 + ECD_03834 0.59 +0.8
4,051,714 - ECD_03834 0.59 -1.1
4,051,714 - ECD_03834 0.59 -0.3
4,051,714 - ECD_03834 0.59 +1.2
4,051,714 - ECD_03834 0.59 +1.1
4,051,716 - ECD_03834 0.59 +0.2
4,051,743 - ECD_03834 0.62 +0.2
4,051,939 + ECD_03834 0.80 -0.1
4,051,940 - ECD_03834 0.80 -0.9
4,051,940 - ECD_03834 0.80 +1.1
4,051,940 - ECD_03834 0.80 -0.4
4,051,969 - ECD_03834 0.83 -1.2
4,051,969 - ECD_03834 0.83 +0.8
4,052,022 + ECD_03834 0.88 -0.0
4,052,023 - ECD_03834 0.88 +0.2
4,052,023 - ECD_03834 0.88 -0.5
4,052,154 + -1.4
4,052,222 + ECD_03835 0.16 -0.5
4,052,222 + ECD_03835 0.16 +0.6
4,052,222 + ECD_03835 0.16 +0.3
4,052,222 + ECD_03835 0.16 -0.3
4,052,222 + ECD_03835 0.16 -0.1
4,052,222 + ECD_03835 0.16 -0.3
4,052,222 + ECD_03835 0.16 +0.6
4,052,222 + ECD_03835 0.16 +3.3
4,052,222 + ECD_03835 0.16 +0.3
4,052,222 + ECD_03835 0.16 +0.1
4,052,222 + ECD_03835 0.16 +0.6
4,052,222 + ECD_03835 0.16 -0.1
4,052,222 + ECD_03835 0.16 +0.2
4,052,222 + ECD_03835 0.16 +0.1
4,052,222 + ECD_03835 0.16 -0.3
4,052,222 + ECD_03835 0.16 +0.5
4,052,222 + ECD_03835 0.16 +1.3
4,052,222 + ECD_03835 0.16 +0.7
4,052,222 + ECD_03835 0.16 +0.2
4,052,222 + ECD_03835 0.16 +1.4
4,052,223 - ECD_03835 0.16 -0.5
4,052,223 - ECD_03835 0.16 -0.7
4,052,223 - ECD_03835 0.16 -0.4
4,052,223 - ECD_03835 0.16 +0.7
4,052,223 - ECD_03835 0.16 -0.8
4,052,223 - ECD_03835 0.16 +0.6
4,052,223 - ECD_03835 0.16 -0.9
4,052,223 - ECD_03835 0.16 +0.1
4,052,224 + ECD_03835 0.17 +1.7
4,052,281 - ECD_03835 0.34 +0.4
4,052,345 - ECD_03835 0.54 +0.3
4,052,453 - ECD_03835 0.88 -0.3
4,052,489 + +0.9
4,052,490 - -0.1
4,052,553 + -0.0
4,052,553 + -0.5
4,052,554 - +0.3
4,052,554 - -2.0
4,052,586 + +0.5
4,052,620 + +1.0
4,052,686 + +0.2
4,052,686 + +0.4
4,052,687 - -1.3
4,052,687 - +0.4
4,052,687 - +0.6
4,052,687 - +0.2
4,052,687 - +1.0
4,052,750 + -0.5
4,052,769 + -0.2
4,052,770 - +5.5
4,052,792 - ECD_03836 0.11 +0.2
4,052,847 + ECD_03836 0.13 +0.4
4,052,862 + ECD_03836 0.14 -0.3
4,052,868 + ECD_03836 0.14 +1.0
4,052,869 - ECD_03836 0.14 -0.2
4,052,869 - ECD_03836 0.14 +1.1
4,052,869 - ECD_03836 0.14 +0.2
4,052,869 - ECD_03836 0.14 +0.6
4,052,948 + ECD_03836 0.18 -0.8
4,052,949 - ECD_03836 0.18 -0.3
4,052,949 - ECD_03836 0.18 -0.2
4,052,994 + ECD_03836 0.20 +0.5
4,052,994 + ECD_03836 0.20 +0.9
4,052,994 + ECD_03836 0.20 +0.1
4,052,995 - ECD_03836 0.20 -0.7
4,052,995 - ECD_03836 0.20 +4.9
4,053,012 + ECD_03836 0.20 -0.2
4,053,013 - ECD_03836 0.20 +0.1
4,053,013 - ECD_03836 0.20 -1.5
4,053,015 + ECD_03836 0.21 +0.2
4,053,015 + ECD_03836 0.21 -0.5
4,053,106 + ECD_03836 0.25 -1.0
4,053,107 - ECD_03836 0.25 +0.1
4,053,258 + ECD_03836 0.31 -1.2
4,053,258 + ECD_03836 0.31 -0.9
4,053,259 - ECD_03836 0.31 -0.2
4,053,259 - ECD_03836 0.31 -0.1
4,053,299 - ECD_03836 0.33 +0.4
4,053,319 + ECD_03836 0.34 -1.4
4,053,364 + ECD_03836 0.36 -1.3
4,053,364 + ECD_03836 0.36 -0.0
4,053,365 - ECD_03836 0.36 +2.0
4,053,365 - ECD_03836 0.36 +1.0
4,053,365 - ECD_03836 0.36 +0.7
4,053,366 + ECD_03836 0.36 +1.0
4,053,366 + ECD_03836 0.36 +0.1
4,053,366 + ECD_03836 0.36 +1.7
4,053,367 - ECD_03836 0.36 -0.3
4,053,367 - ECD_03836 0.36 +0.7
4,053,367 - ECD_03836 0.36 +0.1
4,053,367 - ECD_03836 0.36 -0.1
4,053,367 - ECD_03836 0.36 +3.7
4,053,441 - ECD_03836 0.39 -1.0

Or see this region's nucleotide sequence