Strain Fitness in Escherichia coli BL21 around ECD_03802

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03801 and ECD_03802 are separated by 319 nucleotidesECD_03802 and ECD_03803 are separated by 106 nucleotidesECD_03803 and ECD_03804 are separated by 54 nucleotides ECD_03801: ECD_03801 - 6-phosphofructokinase I, at 4,015,474 to 4,016,436 _03801 ECD_03802: ECD_03802 - sulfate transporter subunit, at 4,016,756 to 4,017,745 _03802 ECD_03803: ECD_03803 - CDP-diacylglycerol phosphotidylhydrolase, at 4,017,852 to 4,018,607 _03803 ECD_03804: ECD_03804 - triosephosphate isomerase, at 4,018,662 to 4,019,429 _03804 Position (kb) 4016 4017 4018Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4015.792 kb on + strand, within ECD_03801at 4015.792 kb on + strand, within ECD_03801at 4015.792 kb on + strand, within ECD_03801at 4015.793 kb on - strand, within ECD_03801at 4015.793 kb on - strand, within ECD_03801at 4015.793 kb on - strand, within ECD_03801at 4015.793 kb on - strand, within ECD_03801at 4015.879 kb on + strand, within ECD_03801at 4015.879 kb on + strand, within ECD_03801at 4015.879 kb on + strand, within ECD_03801at 4015.879 kb on + strand, within ECD_03801at 4015.879 kb on + strand, within ECD_03801at 4015.880 kb on - strand, within ECD_03801at 4015.916 kb on + strand, within ECD_03801at 4015.916 kb on + strand, within ECD_03801at 4015.916 kb on + strand, within ECD_03801at 4015.916 kb on + strand, within ECD_03801at 4015.917 kb on - strand, within ECD_03801at 4015.962 kb on + strand, within ECD_03801at 4015.962 kb on + strand, within ECD_03801at 4015.963 kb on - strand, within ECD_03801at 4016.113 kb on - strand, within ECD_03801at 4016.145 kb on + strand, within ECD_03801at 4016.145 kb on + strand, within ECD_03801at 4016.145 kb on + strand, within ECD_03801at 4016.145 kb on + strand, within ECD_03801at 4016.145 kb on + strand, within ECD_03801at 4016.145 kb on + strand, within ECD_03801at 4016.145 kb on + strand, within ECD_03801at 4016.146 kb on - strand, within ECD_03801at 4016.146 kb on - strand, within ECD_03801at 4016.146 kb on - strand, within ECD_03801at 4016.146 kb on - strand, within ECD_03801at 4016.146 kb on - strand, within ECD_03801at 4016.146 kb on - strand, within ECD_03801at 4016.251 kb on + strand, within ECD_03801at 4016.251 kb on + strand, within ECD_03801at 4016.284 kb on + strand, within ECD_03801at 4016.284 kb on + strand, within ECD_03801at 4016.284 kb on + strand, within ECD_03801at 4016.284 kb on + strand, within ECD_03801at 4016.285 kb on - strand, within ECD_03801at 4016.285 kb on - strand, within ECD_03801at 4016.327 kb on + strand, within ECD_03801at 4016.327 kb on + strand, within ECD_03801at 4016.327 kb on + strand, within ECD_03801at 4016.328 kb on - strand, within ECD_03801at 4016.328 kb on - strand, within ECD_03801at 4016.332 kb on - strand, within ECD_03801at 4016.431 kb on + strandat 4016.435 kb on - strandat 4016.618 kb on - strandat 4016.618 kb on - strandat 4016.741 kb on + strandat 4016.741 kb on + strandat 4016.741 kb on + strandat 4016.741 kb on + strandat 4016.741 kb on + strandat 4016.741 kb on + strandat 4016.741 kb on + strandat 4016.742 kb on - strandat 4016.742 kb on - strandat 4016.742 kb on - strandat 4016.742 kb on - strandat 4016.742 kb on - strandat 4016.742 kb on - strandat 4016.772 kb on + strandat 4016.819 kb on - strandat 4016.841 kb on - strandat 4016.861 kb on + strand, within ECD_03802at 4016.862 kb on - strand, within ECD_03802at 4016.871 kb on - strand, within ECD_03802at 4016.977 kb on + strand, within ECD_03802at 4016.978 kb on - strand, within ECD_03802at 4017.011 kb on + strand, within ECD_03802at 4017.011 kb on + strand, within ECD_03802at 4017.049 kb on + strand, within ECD_03802at 4017.089 kb on + strand, within ECD_03802at 4017.118 kb on + strand, within ECD_03802at 4017.160 kb on + strand, within ECD_03802at 4017.160 kb on + strand, within ECD_03802at 4017.188 kb on - strand, within ECD_03802at 4017.343 kb on + strand, within ECD_03802at 4017.375 kb on + strand, within ECD_03802at 4017.375 kb on + strand, within ECD_03802at 4017.376 kb on - strand, within ECD_03802at 4017.376 kb on - strand, within ECD_03802at 4017.376 kb on - strand, within ECD_03802at 4017.431 kb on - strand, within ECD_03802at 4017.546 kb on - strand, within ECD_03802at 4017.551 kb on + strand, within ECD_03802at 4017.551 kb on + strand, within ECD_03802at 4017.651 kb on + strandat 4017.652 kb on - strandat 4017.762 kb on - strandat 4017.762 kb on - strandat 4017.838 kb on - strandat 4017.886 kb on + strandat 4017.952 kb on + strand, within ECD_03803at 4017.952 kb on + strand, within ECD_03803at 4017.953 kb on - strand, within ECD_03803at 4017.953 kb on - strand, within ECD_03803at 4017.956 kb on + strand, within ECD_03803at 4017.956 kb on + strand, within ECD_03803at 4017.957 kb on - strand, within ECD_03803at 4017.957 kb on - strand, within ECD_03803at 4018.062 kb on - strand, within ECD_03803at 4018.077 kb on + strand, within ECD_03803at 4018.078 kb on - strand, within ECD_03803at 4018.095 kb on + strand, within ECD_03803at 4018.100 kb on + strand, within ECD_03803at 4018.101 kb on - strand, within ECD_03803at 4018.101 kb on - strand, within ECD_03803at 4018.110 kb on - strand, within ECD_03803at 4018.253 kb on + strand, within ECD_03803at 4018.271 kb on + strand, within ECD_03803at 4018.277 kb on + strand, within ECD_03803at 4018.277 kb on + strand, within ECD_03803at 4018.277 kb on + strand, within ECD_03803at 4018.277 kb on + strand, within ECD_03803at 4018.277 kb on + strand, within ECD_03803at 4018.277 kb on + strand, within ECD_03803at 4018.278 kb on - strand, within ECD_03803at 4018.278 kb on - strand, within ECD_03803at 4018.278 kb on - strand, within ECD_03803at 4018.286 kb on + strand, within ECD_03803at 4018.286 kb on + strand, within ECD_03803at 4018.287 kb on - strand, within ECD_03803at 4018.414 kb on + strand, within ECD_03803at 4018.415 kb on - strand, within ECD_03803at 4018.431 kb on - strand, within ECD_03803at 4018.431 kb on - strand, within ECD_03803at 4018.431 kb on - strand, within ECD_03803at 4018.431 kb on - strand, within ECD_03803at 4018.431 kb on - strand, within ECD_03803at 4018.469 kb on + strand, within ECD_03803at 4018.509 kb on - strand, within ECD_03803at 4018.509 kb on - strand, within ECD_03803at 4018.509 kb on - strand, within ECD_03803at 4018.619 kb on - strandat 4018.619 kb on - strandat 4018.627 kb on + strandat 4018.628 kb on - strandat 4018.663 kb on + strandat 4018.663 kb on + strandat 4018.664 kb on - strandat 4018.664 kb on - strandat 4018.691 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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4,015,792 + ECD_03801 0.33 +1.4
4,015,792 + ECD_03801 0.33 +3.0
4,015,792 + ECD_03801 0.33 +0.1
4,015,793 - ECD_03801 0.33 +0.2
4,015,793 - ECD_03801 0.33 +0.6
4,015,793 - ECD_03801 0.33 -1.0
4,015,793 - ECD_03801 0.33 -0.5
4,015,879 + ECD_03801 0.42 +1.0
4,015,879 + ECD_03801 0.42 +2.0
4,015,879 + ECD_03801 0.42 +2.4
4,015,879 + ECD_03801 0.42 -0.4
4,015,879 + ECD_03801 0.42 -1.2
4,015,880 - ECD_03801 0.42 +2.0
4,015,916 + ECD_03801 0.46 -0.0
4,015,916 + ECD_03801 0.46 -1.2
4,015,916 + ECD_03801 0.46 +0.6
4,015,916 + ECD_03801 0.46 +0.2
4,015,917 - ECD_03801 0.46 -0.2
4,015,962 + ECD_03801 0.51 +0.2
4,015,962 + ECD_03801 0.51 +1.0
4,015,963 - ECD_03801 0.51 +4.0
4,016,113 - ECD_03801 0.66 -1.1
4,016,145 + ECD_03801 0.70 -1.4
4,016,145 + ECD_03801 0.70 -0.7
4,016,145 + ECD_03801 0.70 -0.0
4,016,145 + ECD_03801 0.70 +0.5
4,016,145 + ECD_03801 0.70 +0.8
4,016,145 + ECD_03801 0.70 -1.2
4,016,145 + ECD_03801 0.70 -0.5
4,016,146 - ECD_03801 0.70 -1.5
4,016,146 - ECD_03801 0.70 -2.4
4,016,146 - ECD_03801 0.70 +4.0
4,016,146 - ECD_03801 0.70 -1.3
4,016,146 - ECD_03801 0.70 -0.6
4,016,146 - ECD_03801 0.70 +0.6
4,016,251 + ECD_03801 0.81 -0.6
4,016,251 + ECD_03801 0.81 -0.4
4,016,284 + ECD_03801 0.84 -1.5
4,016,284 + ECD_03801 0.84 -1.4
4,016,284 + ECD_03801 0.84 +2.0
4,016,284 + ECD_03801 0.84 -0.7
4,016,285 - ECD_03801 0.84 -1.6
4,016,285 - ECD_03801 0.84 -1.6
4,016,327 + ECD_03801 0.89 +0.2
4,016,327 + ECD_03801 0.89 +1.0
4,016,327 + ECD_03801 0.89 +2.0
4,016,328 - ECD_03801 0.89 +1.4
4,016,328 - ECD_03801 0.89 +1.0
4,016,332 - ECD_03801 0.89 +2.2
4,016,431 + -0.6
4,016,435 - -1.5
4,016,618 - -0.1
4,016,618 - +0.2
4,016,741 + -0.5
4,016,741 + +0.4
4,016,741 + -1.2
4,016,741 + +1.1
4,016,741 + -0.1
4,016,741 + +0.8
4,016,741 + +0.2
4,016,742 - +0.4
4,016,742 - +0.6
4,016,742 - -0.1
4,016,742 - +0.2
4,016,742 - -1.4
4,016,742 - -1.0
4,016,772 + +0.7
4,016,819 - +1.0
4,016,841 - +0.9
4,016,861 + ECD_03802 0.11 +0.5
4,016,862 - ECD_03802 0.11 +0.7
4,016,871 - ECD_03802 0.12 +1.1
4,016,977 + ECD_03802 0.22 -1.4
4,016,978 - ECD_03802 0.22 -0.7
4,017,011 + ECD_03802 0.26 +0.4
4,017,011 + ECD_03802 0.26 +0.5
4,017,049 + ECD_03802 0.30 -0.1
4,017,089 + ECD_03802 0.34 +0.6
4,017,118 + ECD_03802 0.37 +1.3
4,017,160 + ECD_03802 0.41 +0.4
4,017,160 + ECD_03802 0.41 -0.2
4,017,188 - ECD_03802 0.44 +0.4
4,017,343 + ECD_03802 0.59 -0.5
4,017,375 + ECD_03802 0.63 +5.0
4,017,375 + ECD_03802 0.63 -1.8
4,017,376 - ECD_03802 0.63 +0.3
4,017,376 - ECD_03802 0.63 +0.3
4,017,376 - ECD_03802 0.63 +0.3
4,017,431 - ECD_03802 0.68 +0.1
4,017,546 - ECD_03802 0.80 -1.2
4,017,551 + ECD_03802 0.80 -1.3
4,017,551 + ECD_03802 0.80 -0.3
4,017,651 + +1.3
4,017,652 - +0.2
4,017,762 - -0.3
4,017,762 - -0.8
4,017,838 - -0.2
4,017,886 + +0.8
4,017,952 + ECD_03803 0.13 +0.9
4,017,952 + ECD_03803 0.13 -0.3
4,017,953 - ECD_03803 0.13 +0.9
4,017,953 - ECD_03803 0.13 -0.1
4,017,956 + ECD_03803 0.14 -1.3
4,017,956 + ECD_03803 0.14 -0.0
4,017,957 - ECD_03803 0.14 +0.2
4,017,957 - ECD_03803 0.14 +0.2
4,018,062 - ECD_03803 0.28 +1.4
4,018,077 + ECD_03803 0.30 +0.8
4,018,078 - ECD_03803 0.30 +0.3
4,018,095 + ECD_03803 0.32 +1.3
4,018,100 + ECD_03803 0.33 +1.8
4,018,101 - ECD_03803 0.33 +0.6
4,018,101 - ECD_03803 0.33 +0.8
4,018,110 - ECD_03803 0.34 +0.0
4,018,253 + ECD_03803 0.53 +0.1
4,018,271 + ECD_03803 0.55 +0.6
4,018,277 + ECD_03803 0.56 +0.0
4,018,277 + ECD_03803 0.56 -0.0
4,018,277 + ECD_03803 0.56 +0.3
4,018,277 + ECD_03803 0.56 +1.9
4,018,277 + ECD_03803 0.56 -1.4
4,018,277 + ECD_03803 0.56 +0.6
4,018,278 - ECD_03803 0.56 -0.3
4,018,278 - ECD_03803 0.56 -0.7
4,018,278 - ECD_03803 0.56 +1.0
4,018,286 + ECD_03803 0.57 -1.2
4,018,286 + ECD_03803 0.57 +0.9
4,018,287 - ECD_03803 0.58 +0.9
4,018,414 + ECD_03803 0.74 +1.0
4,018,415 - ECD_03803 0.74 +0.4
4,018,431 - ECD_03803 0.77 +0.2
4,018,431 - ECD_03803 0.77 +1.4
4,018,431 - ECD_03803 0.77 +1.1
4,018,431 - ECD_03803 0.77 +0.2
4,018,431 - ECD_03803 0.77 +0.1
4,018,469 + ECD_03803 0.82 +0.8
4,018,509 - ECD_03803 0.87 -0.5
4,018,509 - ECD_03803 0.87 +0.2
4,018,509 - ECD_03803 0.87 +0.7
4,018,619 - +2.4
4,018,619 - -0.4
4,018,627 + -2.0
4,018,628 - +1.5
4,018,663 + +0.8
4,018,663 + -1.5
4,018,664 - +0.3
4,018,664 - +0.4
4,018,691 + +2.0

Or see this region's nucleotide sequence