Strain Fitness in Escherichia coli BL21 around ECD_03756

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03755 and ECD_03756 are separated by 372 nucleotidesECD_03756 and ECD_03757 are separated by 216 nucleotidesECD_03757 and ECD_03758 are separated by 7 nucleotides ECD_03755: ECD_03755 - glutamine synthetase, at 3,963,323 to 3,964,732 _03755 ECD_03756: ECD_03756 - GTP-binding protein, at 3,965,105 to 3,966,928 _03756 ECD_03757: ECD_03757 - putative DNA-binding transcriptional regulator, at 3,967,145 to 3,967,855 _03757 ECD_03758: ECD_03758 - putative sugar phosphate isomerase, at 3,967,863 to 3,968,843 _03758 Position (kb) 3965 3966 3967Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3964.160 kb on - strand, within ECD_03755at 3964.240 kb on - strand, within ECD_03755at 3964.359 kb on - strand, within ECD_03755at 3964.390 kb on - strand, within ECD_03755at 3964.658 kb on - strandat 3964.658 kb on - strandat 3964.715 kb on + strandat 3964.732 kb on + strandat 3964.733 kb on - strandat 3964.733 kb on - strandat 3964.738 kb on - strandat 3964.738 kb on - strandat 3964.786 kb on - strandat 3964.786 kb on - strandat 3964.913 kb on + strandat 3964.914 kb on - strandat 3964.914 kb on - strandat 3964.914 kb on - strandat 3964.976 kb on + strandat 3965.014 kb on - strandat 3965.014 kb on - strandat 3965.014 kb on - strandat 3965.080 kb on + strandat 3965.125 kb on + strandat 3965.146 kb on - strandat 3965.146 kb on - strandat 3965.146 kb on - strandat 3965.156 kb on - strandat 3965.156 kb on - strandat 3965.170 kb on - strandat 3965.311 kb on + strand, within ECD_03756at 3965.367 kb on + strand, within ECD_03756at 3965.367 kb on + strand, within ECD_03756at 3965.368 kb on - strand, within ECD_03756at 3965.368 kb on - strand, within ECD_03756at 3965.379 kb on + strand, within ECD_03756at 3965.379 kb on + strand, within ECD_03756at 3965.380 kb on - strand, within ECD_03756at 3965.380 kb on - strand, within ECD_03756at 3965.482 kb on + strand, within ECD_03756at 3965.638 kb on + strand, within ECD_03756at 3965.639 kb on - strand, within ECD_03756at 3965.744 kb on + strand, within ECD_03756at 3965.753 kb on + strand, within ECD_03756at 3965.753 kb on + strand, within ECD_03756at 3965.753 kb on + strand, within ECD_03756at 3965.753 kb on + strand, within ECD_03756at 3965.753 kb on + strand, within ECD_03756at 3965.753 kb on + strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3965.754 kb on - strand, within ECD_03756at 3966.028 kb on + strand, within ECD_03756at 3966.028 kb on + strand, within ECD_03756at 3966.028 kb on + strand, within ECD_03756at 3966.029 kb on - strand, within ECD_03756at 3966.082 kb on - strand, within ECD_03756at 3966.123 kb on + strand, within ECD_03756at 3966.290 kb on - strand, within ECD_03756at 3966.370 kb on + strand, within ECD_03756at 3966.414 kb on + strand, within ECD_03756at 3966.414 kb on + strand, within ECD_03756at 3966.415 kb on - strand, within ECD_03756at 3966.415 kb on - strand, within ECD_03756at 3966.500 kb on + strand, within ECD_03756at 3966.528 kb on + strand, within ECD_03756at 3966.586 kb on + strand, within ECD_03756at 3966.685 kb on + strand, within ECD_03756at 3966.708 kb on + strand, within ECD_03756at 3966.709 kb on - strand, within ECD_03756at 3966.837 kb on + strandat 3966.927 kb on - strandat 3967.007 kb on + strandat 3967.008 kb on - strandat 3967.016 kb on + strandat 3967.016 kb on + strandat 3967.016 kb on + strandat 3967.018 kb on + strandat 3967.058 kb on - strandat 3967.072 kb on - strandat 3967.140 kb on - strandat 3967.168 kb on - strandat 3967.270 kb on + strand, within ECD_03757at 3967.370 kb on - strand, within ECD_03757at 3967.556 kb on - strand, within ECD_03757at 3967.578 kb on - strand, within ECD_03757at 3967.578 kb on - strand, within ECD_03757at 3967.579 kb on + strand, within ECD_03757at 3967.579 kb on + strand, within ECD_03757at 3967.579 kb on + strand, within ECD_03757at 3967.580 kb on - strand, within ECD_03757at 3967.582 kb on + strand, within ECD_03757at 3967.724 kb on + strand, within ECD_03757at 3967.724 kb on + strand, within ECD_03757

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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3,964,160 - ECD_03755 0.59 +0.3
3,964,240 - ECD_03755 0.65 -0.5
3,964,359 - ECD_03755 0.73 +1.8
3,964,390 - ECD_03755 0.76 +0.2
3,964,658 - -1.8
3,964,658 - +1.0
3,964,715 + +1.0
3,964,732 + +1.4
3,964,733 - +4.1
3,964,733 - -1.9
3,964,738 - +0.8
3,964,738 - +0.7
3,964,786 - +0.2
3,964,786 - +3.0
3,964,913 + +0.1
3,964,914 - +1.5
3,964,914 - +0.2
3,964,914 - -0.0
3,964,976 + +1.5
3,965,014 - -0.2
3,965,014 - +0.0
3,965,014 - -0.1
3,965,080 + +4.5
3,965,125 + +3.7
3,965,146 - +5.3
3,965,146 - +4.6
3,965,146 - +3.9
3,965,156 - +3.7
3,965,156 - +4.6
3,965,170 - +5.2
3,965,311 + ECD_03756 0.11 +4.9
3,965,367 + ECD_03756 0.14 +5.2
3,965,367 + ECD_03756 0.14 +4.7
3,965,368 - ECD_03756 0.14 +4.8
3,965,368 - ECD_03756 0.14 +3.9
3,965,379 + ECD_03756 0.15 +4.4
3,965,379 + ECD_03756 0.15 +4.5
3,965,380 - ECD_03756 0.15 +4.7
3,965,380 - ECD_03756 0.15 +4.9
3,965,482 + ECD_03756 0.21 +5.2
3,965,638 + ECD_03756 0.29 +4.9
3,965,639 - ECD_03756 0.29 +4.1
3,965,744 + ECD_03756 0.35 +5.0
3,965,753 + ECD_03756 0.36 +4.3
3,965,753 + ECD_03756 0.36 +4.1
3,965,753 + ECD_03756 0.36 +4.8
3,965,753 + ECD_03756 0.36 +5.1
3,965,753 + ECD_03756 0.36 +3.6
3,965,753 + ECD_03756 0.36 +3.9
3,965,754 - ECD_03756 0.36 +4.5
3,965,754 - ECD_03756 0.36 +4.9
3,965,754 - ECD_03756 0.36 +5.2
3,965,754 - ECD_03756 0.36 +4.3
3,965,754 - ECD_03756 0.36 +4.3
3,965,754 - ECD_03756 0.36 +4.4
3,965,754 - ECD_03756 0.36 +4.5
3,965,754 - ECD_03756 0.36 +4.6
3,965,754 - ECD_03756 0.36 +5.0
3,965,754 - ECD_03756 0.36 +4.6
3,965,754 - ECD_03756 0.36 +4.1
3,965,754 - ECD_03756 0.36 +4.5
3,966,028 + ECD_03756 0.51 +4.6
3,966,028 + ECD_03756 0.51 +4.2
3,966,028 + ECD_03756 0.51 +4.1
3,966,029 - ECD_03756 0.51 +3.9
3,966,082 - ECD_03756 0.54 +2.8
3,966,123 + ECD_03756 0.56 +5.3
3,966,290 - ECD_03756 0.65 +4.0
3,966,370 + ECD_03756 0.69 +4.2
3,966,414 + ECD_03756 0.72 +5.0
3,966,414 + ECD_03756 0.72 +5.2
3,966,415 - ECD_03756 0.72 +4.7
3,966,415 - ECD_03756 0.72 +4.5
3,966,500 + ECD_03756 0.76 +4.3
3,966,528 + ECD_03756 0.78 +3.9
3,966,586 + ECD_03756 0.81 +4.0
3,966,685 + ECD_03756 0.87 +3.7
3,966,708 + ECD_03756 0.88 +4.7
3,966,709 - ECD_03756 0.88 +4.1
3,966,837 + +4.2
3,966,927 - +3.4
3,967,007 + -0.6
3,967,008 - -0.8
3,967,016 + -0.3
3,967,016 + +0.5
3,967,016 + -1.6
3,967,018 + -0.1
3,967,058 - +0.5
3,967,072 - +0.6
3,967,140 - +0.6
3,967,168 - +0.5
3,967,270 + ECD_03757 0.18 +0.8
3,967,370 - ECD_03757 0.32 +0.7
3,967,556 - ECD_03757 0.58 +0.0
3,967,578 - ECD_03757 0.61 +0.2
3,967,578 - ECD_03757 0.61 +0.4
3,967,579 + ECD_03757 0.61 +0.1
3,967,579 + ECD_03757 0.61 -0.4
3,967,579 + ECD_03757 0.61 +0.9
3,967,580 - ECD_03757 0.61 -0.1
3,967,582 + ECD_03757 0.61 +0.4
3,967,724 + ECD_03757 0.81 +0.6
3,967,724 + ECD_03757 0.81 +0.0

Or see this region's nucleotide sequence