Strain Fitness in Escherichia coli BL21 around ECD_03674

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03672 and ECD_03673 are separated by 2 nucleotidesECD_03673 and ECD_03674 are separated by 190 nucleotidesECD_03674 and ECD_t00067 are separated by 102 nucleotidesECD_t00067 and ECD_t00068 are separated by 58 nucleotidesECD_t00068 and ECD_t00069 are separated by 20 nucleotidesECD_t00069 and ECD_t00070 are separated by 42 nucleotidesECD_t00070 and ECD_03675 are separated by 146 nucleotides ECD_03672: ECD_03672 - putative ECA polysaccharide chain elongation protein, at 3,868,841 to 3,870,193 _03672 ECD_03673: ECD_03673 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 3,870,196 to 3,870,936 _03673 ECD_03674: ECD_03674 - putative APC family amino acid transporter, at 3,871,127 to 3,872,512 _03674 ECD_t00067: ECD_t00067 - tRNA-Arg, at 3,872,615 to 3,872,691 _t00067 ECD_t00068: ECD_t00068 - tRNA-His, at 3,872,750 to 3,872,825 _t00068 ECD_t00069: ECD_t00069 - tRNA-Leu, at 3,872,846 to 3,872,932 _t00069 ECD_t00070: ECD_t00070 - tRNA-Pro, at 3,872,975 to 3,873,051 _t00070 ECD_03675: ECD_03675 - putative AslA-specific sulfatase-maturating enzyme, at 3,873,198 to 3,874,433 _03675 Position (kb) 3871 3872 3873Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3870.151 kb on + strandat 3870.151 kb on + strandat 3870.151 kb on + strandat 3870.201 kb on + strandat 3870.223 kb on + strandat 3870.224 kb on - strandat 3870.224 kb on - strandat 3870.226 kb on - strandat 3870.239 kb on + strandat 3870.281 kb on - strand, within ECD_03673at 3870.281 kb on - strand, within ECD_03673at 3870.281 kb on - strand, within ECD_03673at 3870.303 kb on + strand, within ECD_03673at 3870.377 kb on + strand, within ECD_03673at 3870.382 kb on - strand, within ECD_03673at 3870.397 kb on - strand, within ECD_03673at 3870.400 kb on + strand, within ECD_03673at 3870.401 kb on - strand, within ECD_03673at 3870.423 kb on - strand, within ECD_03673at 3870.435 kb on + strand, within ECD_03673at 3870.573 kb on + strand, within ECD_03673at 3870.600 kb on + strand, within ECD_03673at 3870.622 kb on + strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.628 kb on - strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.760 kb on + strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.761 kb on - strand, within ECD_03673at 3870.781 kb on + strand, within ECD_03673at 3870.782 kb on - strand, within ECD_03673at 3870.782 kb on - strand, within ECD_03673at 3870.850 kb on + strand, within ECD_03673at 3870.995 kb on + strandat 3871.016 kb on + strandat 3871.024 kb on + strandat 3871.024 kb on + strandat 3871.072 kb on - strandat 3871.072 kb on - strandat 3871.072 kb on - strandat 3871.136 kb on - strandat 3871.150 kb on - strandat 3871.174 kb on + strandat 3871.174 kb on + strandat 3871.220 kb on - strandat 3871.220 kb on - strandat 3871.260 kb on + strandat 3871.272 kb on - strand, within ECD_03674at 3871.272 kb on - strand, within ECD_03674at 3871.274 kb on - strand, within ECD_03674at 3871.274 kb on - strand, within ECD_03674at 3871.274 kb on - strand, within ECD_03674at 3871.287 kb on + strand, within ECD_03674at 3871.374 kb on - strand, within ECD_03674at 3871.375 kb on + strand, within ECD_03674at 3871.375 kb on + strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.376 kb on - strand, within ECD_03674at 3871.413 kb on - strand, within ECD_03674at 3871.420 kb on + strand, within ECD_03674at 3871.420 kb on + strand, within ECD_03674at 3871.467 kb on - strand, within ECD_03674at 3871.563 kb on - strand, within ECD_03674at 3871.682 kb on - strand, within ECD_03674at 3871.747 kb on + strand, within ECD_03674at 3871.747 kb on + strand, within ECD_03674at 3871.748 kb on - strand, within ECD_03674at 3871.748 kb on - strand, within ECD_03674at 3871.763 kb on + strand, within ECD_03674at 3871.789 kb on + strand, within ECD_03674at 3871.837 kb on - strand, within ECD_03674at 3871.869 kb on - strand, within ECD_03674at 3871.872 kb on + strand, within ECD_03674at 3871.872 kb on + strand, within ECD_03674at 3871.873 kb on - strand, within ECD_03674at 3871.873 kb on - strand, within ECD_03674at 3871.917 kb on + strand, within ECD_03674at 3871.918 kb on - strand, within ECD_03674at 3871.918 kb on - strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.036 kb on + strand, within ECD_03674at 3872.037 kb on - strand, within ECD_03674at 3872.037 kb on - strand, within ECD_03674at 3872.037 kb on - strand, within ECD_03674at 3872.037 kb on - strand, within ECD_03674at 3872.050 kb on + strand, within ECD_03674at 3872.050 kb on + strand, within ECD_03674at 3872.050 kb on + strand, within ECD_03674at 3872.050 kb on + strand, within ECD_03674at 3872.050 kb on + strand, within ECD_03674at 3872.051 kb on - strand, within ECD_03674at 3872.051 kb on - strand, within ECD_03674at 3872.051 kb on - strand, within ECD_03674at 3872.051 kb on - strand, within ECD_03674at 3872.051 kb on - strand, within ECD_03674at 3872.051 kb on - strand, within ECD_03674at 3872.051 kb on - strand, within ECD_03674at 3872.057 kb on + strand, within ECD_03674at 3872.057 kb on + strand, within ECD_03674at 3872.058 kb on - strand, within ECD_03674at 3872.058 kb on - strand, within ECD_03674at 3872.139 kb on + strand, within ECD_03674at 3872.139 kb on + strand, within ECD_03674at 3872.139 kb on + strand, within ECD_03674at 3872.140 kb on - strand, within ECD_03674at 3872.143 kb on + strand, within ECD_03674at 3872.143 kb on + strand, within ECD_03674at 3872.143 kb on + strand, within ECD_03674at 3872.144 kb on - strand, within ECD_03674at 3872.144 kb on - strand, within ECD_03674at 3872.144 kb on - strand, within ECD_03674at 3872.144 kb on - strand, within ECD_03674at 3872.144 kb on - strand, within ECD_03674at 3872.144 kb on - strand, within ECD_03674at 3872.150 kb on - strand, within ECD_03674at 3872.150 kb on - strand, within ECD_03674at 3872.177 kb on + strand, within ECD_03674at 3872.177 kb on + strand, within ECD_03674at 3872.178 kb on - strand, within ECD_03674at 3872.178 kb on - strand, within ECD_03674at 3872.178 kb on - strand, within ECD_03674at 3872.210 kb on + strand, within ECD_03674at 3872.210 kb on + strand, within ECD_03674at 3872.211 kb on - strand, within ECD_03674at 3872.216 kb on + strand, within ECD_03674at 3872.216 kb on + strand, within ECD_03674at 3872.216 kb on + strand, within ECD_03674at 3872.217 kb on - strand, within ECD_03674at 3872.217 kb on - strand, within ECD_03674at 3872.260 kb on - strand, within ECD_03674at 3872.294 kb on - strand, within ECD_03674at 3872.348 kb on + strand, within ECD_03674at 3872.348 kb on + strand, within ECD_03674at 3872.348 kb on + strand, within ECD_03674at 3872.348 kb on + strand, within ECD_03674at 3872.349 kb on - strand, within ECD_03674at 3872.349 kb on - strand, within ECD_03674at 3872.349 kb on - strand, within ECD_03674at 3872.349 kb on - strand, within ECD_03674at 3872.349 kb on - strand, within ECD_03674at 3872.352 kb on + strand, within ECD_03674at 3872.352 kb on + strand, within ECD_03674at 3872.352 kb on + strand, within ECD_03674at 3872.353 kb on - strand, within ECD_03674at 3872.390 kb on + strandat 3872.390 kb on + strandat 3872.391 kb on - strandat 3872.391 kb on - strandat 3872.391 kb on - strandat 3872.391 kb on - strandat 3872.400 kb on + strandat 3872.404 kb on + strandat 3872.405 kb on - strandat 3872.410 kb on + strandat 3872.410 kb on + strandat 3872.411 kb on - strandat 3872.411 kb on - strandat 3872.411 kb on - strandat 3872.411 kb on - strandat 3872.411 kb on - strandat 3872.488 kb on + strandat 3872.497 kb on + strandat 3872.694 kb on + strandat 3872.723 kb on + strandat 3872.830 kb on + strandat 3872.830 kb on + strandat 3873.126 kb on + strandat 3873.129 kb on + strandat 3873.129 kb on + strandat 3873.147 kb on + strandat 3873.161 kb on + strandat 3873.162 kb on - strandat 3873.261 kb on - strandat 3873.277 kb on - strandat 3873.306 kb on + strandat 3873.307 kb on - strandat 3873.355 kb on - strand, within ECD_03675at 3873.366 kb on + strand, within ECD_03675at 3873.405 kb on - strand, within ECD_03675at 3873.448 kb on - strand, within ECD_03675at 3873.477 kb on + strand, within ECD_03675at 3873.477 kb on + strand, within ECD_03675at 3873.478 kb on - strand, within ECD_03675at 3873.496 kb on + strand, within ECD_03675at 3873.496 kb on + strand, within ECD_03675at 3873.497 kb on - strand, within ECD_03675at 3873.497 kb on - strand, within ECD_03675at 3873.497 kb on - strand, within ECD_03675at 3873.497 kb on - strand, within ECD_03675at 3873.500 kb on + strand, within ECD_03675at 3873.501 kb on - strand, within ECD_03675at 3873.501 kb on - strand, within ECD_03675

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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3,870,151 + -0.7
3,870,151 + -0.1
3,870,151 + +1.1
3,870,201 + -2.5
3,870,223 + +0.3
3,870,224 - +0.1
3,870,224 - +1.3
3,870,226 - +1.6
3,870,239 + +0.9
3,870,281 - ECD_03673 0.11 +2.1
3,870,281 - ECD_03673 0.11 +2.2
3,870,281 - ECD_03673 0.11 +1.3
3,870,303 + ECD_03673 0.14 -0.6
3,870,377 + ECD_03673 0.24 +1.0
3,870,382 - ECD_03673 0.25 +1.2
3,870,397 - ECD_03673 0.27 -0.6
3,870,400 + ECD_03673 0.28 +1.2
3,870,401 - ECD_03673 0.28 +2.3
3,870,423 - ECD_03673 0.31 +0.8
3,870,435 + ECD_03673 0.32 +1.0
3,870,573 + ECD_03673 0.51 +5.2
3,870,600 + ECD_03673 0.55 +0.4
3,870,622 + ECD_03673 0.57 +1.3
3,870,628 - ECD_03673 0.58 -0.0
3,870,628 - ECD_03673 0.58 +1.7
3,870,628 - ECD_03673 0.58 +0.1
3,870,760 + ECD_03673 0.76 +1.3
3,870,760 + ECD_03673 0.76 +1.0
3,870,760 + ECD_03673 0.76 +1.5
3,870,761 - ECD_03673 0.76 +0.7
3,870,761 - ECD_03673 0.76 +1.2
3,870,761 - ECD_03673 0.76 +1.2
3,870,761 - ECD_03673 0.76 -1.5
3,870,781 + ECD_03673 0.79 +1.1
3,870,782 - ECD_03673 0.79 +1.2
3,870,782 - ECD_03673 0.79 +1.2
3,870,850 + ECD_03673 0.88 +1.4
3,870,995 + +0.0
3,871,016 + +0.9
3,871,024 + +1.2
3,871,024 + +0.2
3,871,072 - -1.2
3,871,072 - -1.3
3,871,072 - -0.4
3,871,136 - +1.6
3,871,150 - -0.1
3,871,174 + -0.1
3,871,174 + +0.9
3,871,220 - +0.5
3,871,220 - +0.2
3,871,260 + +0.5
3,871,272 - ECD_03674 0.10 -1.7
3,871,272 - ECD_03674 0.10 +0.7
3,871,274 - ECD_03674 0.11 -1.9
3,871,274 - ECD_03674 0.11 -0.2
3,871,274 - ECD_03674 0.11 +0.9
3,871,287 + ECD_03674 0.12 -0.2
3,871,374 - ECD_03674 0.18 -0.3
3,871,375 + ECD_03674 0.18 +0.5
3,871,375 + ECD_03674 0.18 -0.1
3,871,376 - ECD_03674 0.18 +0.3
3,871,376 - ECD_03674 0.18 -0.5
3,871,376 - ECD_03674 0.18 +2.8
3,871,376 - ECD_03674 0.18 -0.7
3,871,376 - ECD_03674 0.18 -1.2
3,871,413 - ECD_03674 0.21 +0.8
3,871,420 + ECD_03674 0.21 -0.0
3,871,420 + ECD_03674 0.21 +0.4
3,871,467 - ECD_03674 0.25 -0.0
3,871,563 - ECD_03674 0.31 +3.3
3,871,682 - ECD_03674 0.40 +1.0
3,871,747 + ECD_03674 0.45 -1.1
3,871,747 + ECD_03674 0.45 -0.2
3,871,748 - ECD_03674 0.45 +0.9
3,871,748 - ECD_03674 0.45 -0.6
3,871,763 + ECD_03674 0.46 +0.1
3,871,789 + ECD_03674 0.48 +1.0
3,871,837 - ECD_03674 0.51 -0.7
3,871,869 - ECD_03674 0.54 -0.6
3,871,872 + ECD_03674 0.54 +2.0
3,871,872 + ECD_03674 0.54 +0.1
3,871,873 - ECD_03674 0.54 +0.7
3,871,873 - ECD_03674 0.54 +4.4
3,871,917 + ECD_03674 0.57 -0.4
3,871,918 - ECD_03674 0.57 +1.3
3,871,918 - ECD_03674 0.57 +0.2
3,872,036 + ECD_03674 0.66 +0.6
3,872,036 + ECD_03674 0.66 -0.4
3,872,036 + ECD_03674 0.66 -0.4
3,872,036 + ECD_03674 0.66 +1.2
3,872,036 + ECD_03674 0.66 -0.5
3,872,036 + ECD_03674 0.66 -0.5
3,872,036 + ECD_03674 0.66 -0.7
3,872,036 + ECD_03674 0.66 +0.5
3,872,037 - ECD_03674 0.66 -0.0
3,872,037 - ECD_03674 0.66 +1.3
3,872,037 - ECD_03674 0.66 +0.5
3,872,037 - ECD_03674 0.66 -0.7
3,872,050 + ECD_03674 0.67 -0.1
3,872,050 + ECD_03674 0.67 -0.9
3,872,050 + ECD_03674 0.67 -0.8
3,872,050 + ECD_03674 0.67 +1.0
3,872,050 + ECD_03674 0.67 +0.8
3,872,051 - ECD_03674 0.67 +4.0
3,872,051 - ECD_03674 0.67 +0.3
3,872,051 - ECD_03674 0.67 +0.9
3,872,051 - ECD_03674 0.67 +0.7
3,872,051 - ECD_03674 0.67 +0.7
3,872,051 - ECD_03674 0.67 -2.2
3,872,051 - ECD_03674 0.67 -1.2
3,872,057 + ECD_03674 0.67 -0.0
3,872,057 + ECD_03674 0.67 +0.7
3,872,058 - ECD_03674 0.67 +0.4
3,872,058 - ECD_03674 0.67 -2.0
3,872,139 + ECD_03674 0.73 +0.4
3,872,139 + ECD_03674 0.73 +0.7
3,872,139 + ECD_03674 0.73 +1.1
3,872,140 - ECD_03674 0.73 +0.0
3,872,143 + ECD_03674 0.73 +0.4
3,872,143 + ECD_03674 0.73 +0.2
3,872,143 + ECD_03674 0.73 +0.5
3,872,144 - ECD_03674 0.73 -1.1
3,872,144 - ECD_03674 0.73 +1.0
3,872,144 - ECD_03674 0.73 +0.5
3,872,144 - ECD_03674 0.73 +0.5
3,872,144 - ECD_03674 0.73 +0.7
3,872,144 - ECD_03674 0.73 -0.6
3,872,150 - ECD_03674 0.74 -0.1
3,872,150 - ECD_03674 0.74 -0.8
3,872,177 + ECD_03674 0.76 +0.4
3,872,177 + ECD_03674 0.76 +4.2
3,872,178 - ECD_03674 0.76 -0.1
3,872,178 - ECD_03674 0.76 -0.8
3,872,178 - ECD_03674 0.76 +0.4
3,872,210 + ECD_03674 0.78 -0.2
3,872,210 + ECD_03674 0.78 +0.8
3,872,211 - ECD_03674 0.78 -0.0
3,872,216 + ECD_03674 0.79 -0.9
3,872,216 + ECD_03674 0.79 -0.3
3,872,216 + ECD_03674 0.79 +0.7
3,872,217 - ECD_03674 0.79 +0.5
3,872,217 - ECD_03674 0.79 -0.1
3,872,260 - ECD_03674 0.82 -0.3
3,872,294 - ECD_03674 0.84 -0.2
3,872,348 + ECD_03674 0.88 +0.4
3,872,348 + ECD_03674 0.88 -0.4
3,872,348 + ECD_03674 0.88 -0.0
3,872,348 + ECD_03674 0.88 +1.0
3,872,349 - ECD_03674 0.88 +0.7
3,872,349 - ECD_03674 0.88 +0.2
3,872,349 - ECD_03674 0.88 -0.4
3,872,349 - ECD_03674 0.88 -0.5
3,872,349 - ECD_03674 0.88 +1.3
3,872,352 + ECD_03674 0.88 -1.8
3,872,352 + ECD_03674 0.88 +0.2
3,872,352 + ECD_03674 0.88 +0.4
3,872,353 - ECD_03674 0.88 -0.7
3,872,390 + +0.1
3,872,390 + -1.1
3,872,391 - -0.4
3,872,391 - +0.1
3,872,391 - +0.8
3,872,391 - +2.7
3,872,400 + -0.9
3,872,404 + +1.4
3,872,405 - +0.2
3,872,410 + +0.4
3,872,410 + +3.9
3,872,411 - +0.2
3,872,411 - +1.6
3,872,411 - +2.3
3,872,411 - +0.6
3,872,411 - +0.6
3,872,488 + +0.5
3,872,497 + +0.6
3,872,694 + +1.4
3,872,723 + -0.0
3,872,830 + +0.2
3,872,830 + +1.0
3,873,126 + -0.6
3,873,129 + +0.3
3,873,129 + +0.5
3,873,147 + +0.1
3,873,161 + +1.3
3,873,162 - +1.3
3,873,261 - +0.3
3,873,277 - +0.8
3,873,306 + +0.4
3,873,307 - -0.3
3,873,355 - ECD_03675 0.13 +1.0
3,873,366 + ECD_03675 0.14 +0.1
3,873,405 - ECD_03675 0.17 +0.1
3,873,448 - ECD_03675 0.20 +2.0
3,873,477 + ECD_03675 0.23 -0.5
3,873,477 + ECD_03675 0.23 -0.1
3,873,478 - ECD_03675 0.23 +1.3
3,873,496 + ECD_03675 0.24 -0.5
3,873,496 + ECD_03675 0.24 +0.9
3,873,497 - ECD_03675 0.24 +2.1
3,873,497 - ECD_03675 0.24 +0.9
3,873,497 - ECD_03675 0.24 +1.3
3,873,497 - ECD_03675 0.24 -0.6
3,873,500 + ECD_03675 0.24 +0.9
3,873,501 - ECD_03675 0.25 +0.8
3,873,501 - ECD_03675 0.25 +0.5

Or see this region's nucleotide sequence