Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03672 and ECD_03673 are separated by 2 nucleotides ECD_03673 and ECD_03674 are separated by 190 nucleotides ECD_03674 and ECD_t00067 are separated by 102 nucleotides ECD_t00067 and ECD_t00068 are separated by 58 nucleotides ECD_t00068 and ECD_t00069 are separated by 20 nucleotides ECD_t00069 and ECD_t00070 are separated by 42 nucleotides ECD_t00070 and ECD_03675 are separated by 146 nucleotides
ECD_03672: ECD_03672 - putative ECA polysaccharide chain elongation protein, at 3,868,841 to 3,870,193
_03672
ECD_03673: ECD_03673 - UDP-N-acetyl-D-mannosaminuronic acid transferase, at 3,870,196 to 3,870,936
_03673
ECD_03674: ECD_03674 - putative APC family amino acid transporter, at 3,871,127 to 3,872,512
_03674
ECD_t00067: ECD_t00067 - tRNA-Arg, at 3,872,615 to 3,872,691
_t00067
ECD_t00068: ECD_t00068 - tRNA-His, at 3,872,750 to 3,872,825
_t00068
ECD_t00069: ECD_t00069 - tRNA-Leu, at 3,872,846 to 3,872,932
_t00069
ECD_t00070: ECD_t00070 - tRNA-Pro, at 3,872,975 to 3,873,051
_t00070
ECD_03675: ECD_03675 - putative AslA-specific sulfatase-maturating enzyme, at 3,873,198 to 3,874,433
_03675
Position (kb)
3871
3872
3873 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3870.151 kb on + strand at 3870.151 kb on + strand at 3870.151 kb on + strand at 3870.201 kb on + strand at 3870.223 kb on + strand at 3870.224 kb on - strand at 3870.224 kb on - strand at 3870.226 kb on - strand at 3870.239 kb on + strand at 3870.281 kb on - strand, within ECD_03673 at 3870.281 kb on - strand, within ECD_03673 at 3870.281 kb on - strand, within ECD_03673 at 3870.303 kb on + strand, within ECD_03673 at 3870.377 kb on + strand, within ECD_03673 at 3870.382 kb on - strand, within ECD_03673 at 3870.397 kb on - strand, within ECD_03673 at 3870.400 kb on + strand, within ECD_03673 at 3870.401 kb on - strand, within ECD_03673 at 3870.423 kb on - strand, within ECD_03673 at 3870.435 kb on + strand, within ECD_03673 at 3870.573 kb on + strand, within ECD_03673 at 3870.600 kb on + strand, within ECD_03673 at 3870.622 kb on + strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.628 kb on - strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.760 kb on + strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.761 kb on - strand, within ECD_03673 at 3870.781 kb on + strand, within ECD_03673 at 3870.782 kb on - strand, within ECD_03673 at 3870.782 kb on - strand, within ECD_03673 at 3870.850 kb on + strand, within ECD_03673 at 3870.995 kb on + strand at 3871.016 kb on + strand at 3871.024 kb on + strand at 3871.024 kb on + strand at 3871.072 kb on - strand at 3871.072 kb on - strand at 3871.072 kb on - strand at 3871.136 kb on - strand at 3871.150 kb on - strand at 3871.174 kb on + strand at 3871.174 kb on + strand at 3871.220 kb on - strand at 3871.220 kb on - strand at 3871.260 kb on + strand at 3871.272 kb on - strand, within ECD_03674 at 3871.272 kb on - strand, within ECD_03674 at 3871.274 kb on - strand, within ECD_03674 at 3871.274 kb on - strand, within ECD_03674 at 3871.274 kb on - strand, within ECD_03674 at 3871.287 kb on + strand, within ECD_03674 at 3871.374 kb on - strand, within ECD_03674 at 3871.375 kb on + strand, within ECD_03674 at 3871.375 kb on + strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.376 kb on - strand, within ECD_03674 at 3871.413 kb on - strand, within ECD_03674 at 3871.420 kb on + strand, within ECD_03674 at 3871.420 kb on + strand, within ECD_03674 at 3871.467 kb on - strand, within ECD_03674 at 3871.563 kb on - strand, within ECD_03674 at 3871.682 kb on - strand, within ECD_03674 at 3871.747 kb on + strand, within ECD_03674 at 3871.747 kb on + strand, within ECD_03674 at 3871.748 kb on - strand, within ECD_03674 at 3871.748 kb on - strand, within ECD_03674 at 3871.763 kb on + strand, within ECD_03674 at 3871.789 kb on + strand, within ECD_03674 at 3871.837 kb on - strand, within ECD_03674 at 3871.869 kb on - strand, within ECD_03674 at 3871.872 kb on + strand, within ECD_03674 at 3871.872 kb on + strand, within ECD_03674 at 3871.873 kb on - strand, within ECD_03674 at 3871.873 kb on - strand, within ECD_03674 at 3871.917 kb on + strand, within ECD_03674 at 3871.918 kb on - strand, within ECD_03674 at 3871.918 kb on - strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.036 kb on + strand, within ECD_03674 at 3872.037 kb on - strand, within ECD_03674 at 3872.037 kb on - strand, within ECD_03674 at 3872.037 kb on - strand, within ECD_03674 at 3872.037 kb on - strand, within ECD_03674 at 3872.050 kb on + strand, within ECD_03674 at 3872.050 kb on + strand, within ECD_03674 at 3872.050 kb on + strand, within ECD_03674 at 3872.050 kb on + strand, within ECD_03674 at 3872.050 kb on + strand, within ECD_03674 at 3872.051 kb on - strand, within ECD_03674 at 3872.051 kb on - strand, within ECD_03674 at 3872.051 kb on - strand, within ECD_03674 at 3872.051 kb on - strand, within ECD_03674 at 3872.051 kb on - strand, within ECD_03674 at 3872.051 kb on - strand, within ECD_03674 at 3872.051 kb on - strand, within ECD_03674 at 3872.057 kb on + strand, within ECD_03674 at 3872.057 kb on + strand, within ECD_03674 at 3872.058 kb on - strand, within ECD_03674 at 3872.058 kb on - strand, within ECD_03674 at 3872.139 kb on + strand, within ECD_03674 at 3872.139 kb on + strand, within ECD_03674 at 3872.139 kb on + strand, within ECD_03674 at 3872.140 kb on - strand, within ECD_03674 at 3872.143 kb on + strand, within ECD_03674 at 3872.143 kb on + strand, within ECD_03674 at 3872.143 kb on + strand, within ECD_03674 at 3872.144 kb on - strand, within ECD_03674 at 3872.144 kb on - strand, within ECD_03674 at 3872.144 kb on - strand, within ECD_03674 at 3872.144 kb on - strand, within ECD_03674 at 3872.144 kb on - strand, within ECD_03674 at 3872.144 kb on - strand, within ECD_03674 at 3872.150 kb on - strand, within ECD_03674 at 3872.150 kb on - strand, within ECD_03674 at 3872.177 kb on + strand, within ECD_03674 at 3872.177 kb on + strand, within ECD_03674 at 3872.178 kb on - strand, within ECD_03674 at 3872.178 kb on - strand, within ECD_03674 at 3872.178 kb on - strand, within ECD_03674 at 3872.210 kb on + strand, within ECD_03674 at 3872.210 kb on + strand, within ECD_03674 at 3872.211 kb on - strand, within ECD_03674 at 3872.216 kb on + strand, within ECD_03674 at 3872.216 kb on + strand, within ECD_03674 at 3872.216 kb on + strand, within ECD_03674 at 3872.217 kb on - strand, within ECD_03674 at 3872.217 kb on - strand, within ECD_03674 at 3872.260 kb on - strand, within ECD_03674 at 3872.294 kb on - strand, within ECD_03674 at 3872.348 kb on + strand, within ECD_03674 at 3872.348 kb on + strand, within ECD_03674 at 3872.348 kb on + strand, within ECD_03674 at 3872.348 kb on + strand, within ECD_03674 at 3872.349 kb on - strand, within ECD_03674 at 3872.349 kb on - strand, within ECD_03674 at 3872.349 kb on - strand, within ECD_03674 at 3872.349 kb on - strand, within ECD_03674 at 3872.349 kb on - strand, within ECD_03674 at 3872.352 kb on + strand, within ECD_03674 at 3872.352 kb on + strand, within ECD_03674 at 3872.352 kb on + strand, within ECD_03674 at 3872.353 kb on - strand, within ECD_03674 at 3872.390 kb on + strand at 3872.390 kb on + strand at 3872.391 kb on - strand at 3872.391 kb on - strand at 3872.391 kb on - strand at 3872.391 kb on - strand at 3872.400 kb on + strand at 3872.404 kb on + strand at 3872.405 kb on - strand at 3872.410 kb on + strand at 3872.410 kb on + strand at 3872.411 kb on - strand at 3872.411 kb on - strand at 3872.411 kb on - strand at 3872.411 kb on - strand at 3872.411 kb on - strand at 3872.488 kb on + strand at 3872.497 kb on + strand at 3872.694 kb on + strand at 3872.723 kb on + strand at 3872.830 kb on + strand at 3872.830 kb on + strand at 3873.126 kb on + strand at 3873.129 kb on + strand at 3873.129 kb on + strand at 3873.147 kb on + strand at 3873.161 kb on + strand at 3873.162 kb on - strand at 3873.261 kb on - strand at 3873.277 kb on - strand at 3873.306 kb on + strand at 3873.307 kb on - strand at 3873.355 kb on - strand, within ECD_03675 at 3873.366 kb on + strand, within ECD_03675 at 3873.405 kb on - strand, within ECD_03675 at 3873.448 kb on - strand, within ECD_03675 at 3873.477 kb on + strand, within ECD_03675 at 3873.477 kb on + strand, within ECD_03675 at 3873.478 kb on - strand, within ECD_03675 at 3873.496 kb on + strand, within ECD_03675 at 3873.496 kb on + strand, within ECD_03675 at 3873.497 kb on - strand, within ECD_03675 at 3873.497 kb on - strand, within ECD_03675 at 3873.497 kb on - strand, within ECD_03675 at 3873.497 kb on - strand, within ECD_03675 at 3873.500 kb on + strand, within ECD_03675 at 3873.501 kb on - strand, within ECD_03675 at 3873.501 kb on - strand, within ECD_03675
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,870,151 + -0.7 3,870,151 + -0.1 3,870,151 + +1.1 3,870,201 + -2.5 3,870,223 + +0.3 3,870,224 - +0.1 3,870,224 - +1.3 3,870,226 - +1.6 3,870,239 + +0.9 3,870,281 - ECD_03673 0.11 +2.1 3,870,281 - ECD_03673 0.11 +2.2 3,870,281 - ECD_03673 0.11 +1.3 3,870,303 + ECD_03673 0.14 -0.6 3,870,377 + ECD_03673 0.24 +1.0 3,870,382 - ECD_03673 0.25 +1.2 3,870,397 - ECD_03673 0.27 -0.6 3,870,400 + ECD_03673 0.28 +1.2 3,870,401 - ECD_03673 0.28 +2.3 3,870,423 - ECD_03673 0.31 +0.8 3,870,435 + ECD_03673 0.32 +1.0 3,870,573 + ECD_03673 0.51 +5.2 3,870,600 + ECD_03673 0.55 +0.4 3,870,622 + ECD_03673 0.57 +1.3 3,870,628 - ECD_03673 0.58 -0.0 3,870,628 - ECD_03673 0.58 +1.7 3,870,628 - ECD_03673 0.58 +0.1 3,870,760 + ECD_03673 0.76 +1.3 3,870,760 + ECD_03673 0.76 +1.0 3,870,760 + ECD_03673 0.76 +1.5 3,870,761 - ECD_03673 0.76 +0.7 3,870,761 - ECD_03673 0.76 +1.2 3,870,761 - ECD_03673 0.76 +1.2 3,870,761 - ECD_03673 0.76 -1.5 3,870,781 + ECD_03673 0.79 +1.1 3,870,782 - ECD_03673 0.79 +1.2 3,870,782 - ECD_03673 0.79 +1.2 3,870,850 + ECD_03673 0.88 +1.4 3,870,995 + +0.0 3,871,016 + +0.9 3,871,024 + +1.2 3,871,024 + +0.2 3,871,072 - -1.2 3,871,072 - -1.3 3,871,072 - -0.4 3,871,136 - +1.6 3,871,150 - -0.1 3,871,174 + -0.1 3,871,174 + +0.9 3,871,220 - +0.5 3,871,220 - +0.2 3,871,260 + +0.5 3,871,272 - ECD_03674 0.10 -1.7 3,871,272 - ECD_03674 0.10 +0.7 3,871,274 - ECD_03674 0.11 -1.9 3,871,274 - ECD_03674 0.11 -0.2 3,871,274 - ECD_03674 0.11 +0.9 3,871,287 + ECD_03674 0.12 -0.2 3,871,374 - ECD_03674 0.18 -0.3 3,871,375 + ECD_03674 0.18 +0.5 3,871,375 + ECD_03674 0.18 -0.1 3,871,376 - ECD_03674 0.18 +0.3 3,871,376 - ECD_03674 0.18 -0.5 3,871,376 - ECD_03674 0.18 +2.8 3,871,376 - ECD_03674 0.18 -0.7 3,871,376 - ECD_03674 0.18 -1.2 3,871,413 - ECD_03674 0.21 +0.8 3,871,420 + ECD_03674 0.21 -0.0 3,871,420 + ECD_03674 0.21 +0.4 3,871,467 - ECD_03674 0.25 -0.0 3,871,563 - ECD_03674 0.31 +3.3 3,871,682 - ECD_03674 0.40 +1.0 3,871,747 + ECD_03674 0.45 -1.1 3,871,747 + ECD_03674 0.45 -0.2 3,871,748 - ECD_03674 0.45 +0.9 3,871,748 - ECD_03674 0.45 -0.6 3,871,763 + ECD_03674 0.46 +0.1 3,871,789 + ECD_03674 0.48 +1.0 3,871,837 - ECD_03674 0.51 -0.7 3,871,869 - ECD_03674 0.54 -0.6 3,871,872 + ECD_03674 0.54 +2.0 3,871,872 + ECD_03674 0.54 +0.1 3,871,873 - ECD_03674 0.54 +0.7 3,871,873 - ECD_03674 0.54 +4.4 3,871,917 + ECD_03674 0.57 -0.4 3,871,918 - ECD_03674 0.57 +1.3 3,871,918 - ECD_03674 0.57 +0.2 3,872,036 + ECD_03674 0.66 +0.6 3,872,036 + ECD_03674 0.66 -0.4 3,872,036 + ECD_03674 0.66 -0.4 3,872,036 + ECD_03674 0.66 +1.2 3,872,036 + ECD_03674 0.66 -0.5 3,872,036 + ECD_03674 0.66 -0.5 3,872,036 + ECD_03674 0.66 -0.7 3,872,036 + ECD_03674 0.66 +0.5 3,872,037 - ECD_03674 0.66 -0.0 3,872,037 - ECD_03674 0.66 +1.3 3,872,037 - ECD_03674 0.66 +0.5 3,872,037 - ECD_03674 0.66 -0.7 3,872,050 + ECD_03674 0.67 -0.1 3,872,050 + ECD_03674 0.67 -0.9 3,872,050 + ECD_03674 0.67 -0.8 3,872,050 + ECD_03674 0.67 +1.0 3,872,050 + ECD_03674 0.67 +0.8 3,872,051 - ECD_03674 0.67 +4.0 3,872,051 - ECD_03674 0.67 +0.3 3,872,051 - ECD_03674 0.67 +0.9 3,872,051 - ECD_03674 0.67 +0.7 3,872,051 - ECD_03674 0.67 +0.7 3,872,051 - ECD_03674 0.67 -2.2 3,872,051 - ECD_03674 0.67 -1.2 3,872,057 + ECD_03674 0.67 -0.0 3,872,057 + ECD_03674 0.67 +0.7 3,872,058 - ECD_03674 0.67 +0.4 3,872,058 - ECD_03674 0.67 -2.0 3,872,139 + ECD_03674 0.73 +0.4 3,872,139 + ECD_03674 0.73 +0.7 3,872,139 + ECD_03674 0.73 +1.1 3,872,140 - ECD_03674 0.73 +0.0 3,872,143 + ECD_03674 0.73 +0.4 3,872,143 + ECD_03674 0.73 +0.2 3,872,143 + ECD_03674 0.73 +0.5 3,872,144 - ECD_03674 0.73 -1.1 3,872,144 - ECD_03674 0.73 +1.0 3,872,144 - ECD_03674 0.73 +0.5 3,872,144 - ECD_03674 0.73 +0.5 3,872,144 - ECD_03674 0.73 +0.7 3,872,144 - ECD_03674 0.73 -0.6 3,872,150 - ECD_03674 0.74 -0.1 3,872,150 - ECD_03674 0.74 -0.8 3,872,177 + ECD_03674 0.76 +0.4 3,872,177 + ECD_03674 0.76 +4.2 3,872,178 - ECD_03674 0.76 -0.1 3,872,178 - ECD_03674 0.76 -0.8 3,872,178 - ECD_03674 0.76 +0.4 3,872,210 + ECD_03674 0.78 -0.2 3,872,210 + ECD_03674 0.78 +0.8 3,872,211 - ECD_03674 0.78 -0.0 3,872,216 + ECD_03674 0.79 -0.9 3,872,216 + ECD_03674 0.79 -0.3 3,872,216 + ECD_03674 0.79 +0.7 3,872,217 - ECD_03674 0.79 +0.5 3,872,217 - ECD_03674 0.79 -0.1 3,872,260 - ECD_03674 0.82 -0.3 3,872,294 - ECD_03674 0.84 -0.2 3,872,348 + ECD_03674 0.88 +0.4 3,872,348 + ECD_03674 0.88 -0.4 3,872,348 + ECD_03674 0.88 -0.0 3,872,348 + ECD_03674 0.88 +1.0 3,872,349 - ECD_03674 0.88 +0.7 3,872,349 - ECD_03674 0.88 +0.2 3,872,349 - ECD_03674 0.88 -0.4 3,872,349 - ECD_03674 0.88 -0.5 3,872,349 - ECD_03674 0.88 +1.3 3,872,352 + ECD_03674 0.88 -1.8 3,872,352 + ECD_03674 0.88 +0.2 3,872,352 + ECD_03674 0.88 +0.4 3,872,353 - ECD_03674 0.88 -0.7 3,872,390 + +0.1 3,872,390 + -1.1 3,872,391 - -0.4 3,872,391 - +0.1 3,872,391 - +0.8 3,872,391 - +2.7 3,872,400 + -0.9 3,872,404 + +1.4 3,872,405 - +0.2 3,872,410 + +0.4 3,872,410 + +3.9 3,872,411 - +0.2 3,872,411 - +1.6 3,872,411 - +2.3 3,872,411 - +0.6 3,872,411 - +0.6 3,872,488 + +0.5 3,872,497 + +0.6 3,872,694 + +1.4 3,872,723 + -0.0 3,872,830 + +0.2 3,872,830 + +1.0 3,873,126 + -0.6 3,873,129 + +0.3 3,873,129 + +0.5 3,873,147 + +0.1 3,873,161 + +1.3 3,873,162 - +1.3 3,873,261 - +0.3 3,873,277 - +0.8 3,873,306 + +0.4 3,873,307 - -0.3 3,873,355 - ECD_03675 0.13 +1.0 3,873,366 + ECD_03675 0.14 +0.1 3,873,405 - ECD_03675 0.17 +0.1 3,873,448 - ECD_03675 0.20 +2.0 3,873,477 + ECD_03675 0.23 -0.5 3,873,477 + ECD_03675 0.23 -0.1 3,873,478 - ECD_03675 0.23 +1.3 3,873,496 + ECD_03675 0.24 -0.5 3,873,496 + ECD_03675 0.24 +0.9 3,873,497 - ECD_03675 0.24 +2.1 3,873,497 - ECD_03675 0.24 +0.9 3,873,497 - ECD_03675 0.24 +1.3 3,873,497 - ECD_03675 0.24 -0.6 3,873,500 + ECD_03675 0.24 +0.9 3,873,501 - ECD_03675 0.25 +0.8 3,873,501 - ECD_03675 0.25 +0.5
Or see this region's nucleotide sequence