Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03635 and ECD_03636 are separated by 4 nucleotides ECD_03636 and ECD_03637 are separated by 24 nucleotides
ECD_03635: ECD_03635 - D-ribose ABC transporter ATPase, at 3,824,025 to 3,825,530
_03635
ECD_03636: ECD_03636 - D-ribose ABC transporter permease, at 3,825,535 to 3,826,500
_03636
ECD_03637: ECD_03637 - D-ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor, at 3,826,525 to 3,827,415
_03637
Position (kb)
3825
3826
3827 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.610 kb on + strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.611 kb on - strand, within ECD_03635 at 3824.612 kb on + strand, within ECD_03635 at 3824.612 kb on + strand, within ECD_03635 at 3824.613 kb on - strand, within ECD_03635 at 3824.613 kb on - strand, within ECD_03635 at 3824.613 kb on - strand, within ECD_03635 at 3824.682 kb on - strand, within ECD_03635 at 3824.844 kb on - strand, within ECD_03635 at 3824.848 kb on + strand, within ECD_03635 at 3824.929 kb on + strand, within ECD_03635 at 3824.947 kb on - strand, within ECD_03635 at 3824.947 kb on - strand, within ECD_03635 at 3825.015 kb on + strand, within ECD_03635 at 3825.015 kb on + strand, within ECD_03635 at 3825.015 kb on + strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.016 kb on - strand, within ECD_03635 at 3825.033 kb on - strand, within ECD_03635 at 3825.046 kb on + strand, within ECD_03635 at 3825.046 kb on + strand, within ECD_03635 at 3825.046 kb on + strand, within ECD_03635 at 3825.096 kb on + strand, within ECD_03635 at 3825.301 kb on + strand, within ECD_03635 at 3825.301 kb on + strand, within ECD_03635 at 3825.327 kb on + strand, within ECD_03635 at 3825.327 kb on + strand, within ECD_03635 at 3825.327 kb on + strand, within ECD_03635 at 3825.328 kb on - strand, within ECD_03635 at 3825.398 kb on - strand at 3825.398 kb on - strand at 3825.400 kb on + strand at 3825.401 kb on - strand at 3825.509 kb on + strand at 3825.509 kb on + strand at 3825.566 kb on - strand at 3825.666 kb on + strand, within ECD_03636 at 3825.671 kb on + strand, within ECD_03636 at 3825.678 kb on + strand, within ECD_03636 at 3825.678 kb on + strand, within ECD_03636 at 3825.708 kb on + strand, within ECD_03636 at 3825.708 kb on + strand, within ECD_03636 at 3825.755 kb on + strand, within ECD_03636 at 3825.756 kb on - strand, within ECD_03636 at 3825.762 kb on - strand, within ECD_03636 at 3825.762 kb on - strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.801 kb on + strand, within ECD_03636 at 3825.802 kb on - strand, within ECD_03636 at 3825.802 kb on - strand, within ECD_03636 at 3825.942 kb on - strand, within ECD_03636 at 3825.965 kb on - strand, within ECD_03636 at 3825.966 kb on + strand, within ECD_03636 at 3825.966 kb on + strand, within ECD_03636 at 3826.096 kb on + strand, within ECD_03636 at 3826.096 kb on + strand, within ECD_03636 at 3826.096 kb on + strand, within ECD_03636 at 3826.097 kb on - strand, within ECD_03636 at 3826.097 kb on - strand, within ECD_03636 at 3826.126 kb on + strand, within ECD_03636 at 3826.127 kb on - strand, within ECD_03636 at 3826.127 kb on - strand, within ECD_03636 at 3826.133 kb on - strand, within ECD_03636 at 3826.133 kb on - strand, within ECD_03636 at 3826.133 kb on - strand, within ECD_03636 at 3826.205 kb on - strand, within ECD_03636 at 3826.291 kb on + strand, within ECD_03636 at 3826.292 kb on - strand, within ECD_03636 at 3826.382 kb on + strand, within ECD_03636 at 3826.399 kb on - strand, within ECD_03636 at 3826.432 kb on + strand at 3826.432 kb on + strand at 3826.482 kb on - strand at 3826.482 kb on - strand at 3826.502 kb on - strand at 3826.524 kb on + strand at 3826.524 kb on + strand at 3826.524 kb on + strand at 3826.632 kb on + strand, within ECD_03637 at 3826.632 kb on + strand, within ECD_03637 at 3826.632 kb on + strand, within ECD_03637 at 3826.649 kb on + strand, within ECD_03637 at 3826.650 kb on - strand, within ECD_03637 at 3826.693 kb on + strand, within ECD_03637 at 3826.694 kb on - strand, within ECD_03637 at 3826.694 kb on - strand, within ECD_03637 at 3826.695 kb on + strand, within ECD_03637 at 3826.911 kb on + strand, within ECD_03637 at 3826.916 kb on + strand, within ECD_03637 at 3826.916 kb on + strand, within ECD_03637 at 3826.917 kb on - strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.942 kb on + strand, within ECD_03637 at 3826.943 kb on - strand, within ECD_03637 at 3826.943 kb on - strand, within ECD_03637 at 3827.001 kb on + strand, within ECD_03637 at 3827.002 kb on - strand, within ECD_03637 at 3827.061 kb on + strand, within ECD_03637 at 3827.062 kb on - strand, within ECD_03637 at 3827.062 kb on - strand, within ECD_03637 at 3827.114 kb on + strand, within ECD_03637 at 3827.114 kb on + strand, within ECD_03637 at 3827.115 kb on - strand, within ECD_03637 at 3827.156 kb on + strand, within ECD_03637 at 3827.247 kb on + strand, within ECD_03637 at 3827.285 kb on + strand, within ECD_03637 at 3827.285 kb on + strand, within ECD_03637 at 3827.286 kb on - strand, within ECD_03637 at 3827.286 kb on - strand, within ECD_03637 at 3827.296 kb on - strand, within ECD_03637 at 3827.347 kb on - strand at 3827.347 kb on - strand at 3827.376 kb on + strand at 3827.377 kb on - strand at 3827.414 kb on - strand at 3827.414 kb on - strand at 3827.431 kb on - strand at 3827.431 kb on - strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.448 kb on + strand at 3827.449 kb on - strand at 3827.449 kb on - strand at 3827.452 kb on + strand at 3827.452 kb on + strand at 3827.453 kb on - strand at 3827.453 kb on - strand at 3827.453 kb on - strand at 3827.453 kb on - strand at 3827.475 kb on + strand at 3827.475 kb on + strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.476 kb on - strand at 3827.478 kb on + strand at 3827.478 kb on + strand at 3827.478 kb on + strand at 3827.479 kb on - strand at 3827.479 kb on - strand at 3827.479 kb on - strand at 3827.480 kb on + strand at 3827.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,824,610 + ECD_03635 0.39 -0.1 3,824,610 + ECD_03635 0.39 -0.6 3,824,610 + ECD_03635 0.39 -0.8 3,824,610 + ECD_03635 0.39 +0.1 3,824,610 + ECD_03635 0.39 +0.8 3,824,611 - ECD_03635 0.39 -1.4 3,824,611 - ECD_03635 0.39 +0.2 3,824,611 - ECD_03635 0.39 -0.6 3,824,611 - ECD_03635 0.39 -0.5 3,824,611 - ECD_03635 0.39 +0.8 3,824,612 + ECD_03635 0.39 -0.9 3,824,612 + ECD_03635 0.39 +1.7 3,824,613 - ECD_03635 0.39 -0.8 3,824,613 - ECD_03635 0.39 +1.0 3,824,613 - ECD_03635 0.39 -0.1 3,824,682 - ECD_03635 0.44 -1.0 3,824,844 - ECD_03635 0.54 +1.5 3,824,848 + ECD_03635 0.55 +0.8 3,824,929 + ECD_03635 0.60 +4.2 3,824,947 - ECD_03635 0.61 +1.1 3,824,947 - ECD_03635 0.61 -0.4 3,825,015 + ECD_03635 0.66 +0.5 3,825,015 + ECD_03635 0.66 +0.4 3,825,015 + ECD_03635 0.66 -1.6 3,825,016 - ECD_03635 0.66 +0.8 3,825,016 - ECD_03635 0.66 +0.2 3,825,016 - ECD_03635 0.66 +0.0 3,825,016 - ECD_03635 0.66 +0.0 3,825,033 - ECD_03635 0.67 +0.3 3,825,046 + ECD_03635 0.68 -2.2 3,825,046 + ECD_03635 0.68 -0.1 3,825,046 + ECD_03635 0.68 +0.3 3,825,096 + ECD_03635 0.71 +0.7 3,825,301 + ECD_03635 0.85 -0.3 3,825,301 + ECD_03635 0.85 -1.1 3,825,327 + ECD_03635 0.86 -0.2 3,825,327 + ECD_03635 0.86 -0.0 3,825,327 + ECD_03635 0.86 +0.9 3,825,328 - ECD_03635 0.87 +0.4 3,825,398 - -0.3 3,825,398 - +0.0 3,825,400 + -0.0 3,825,401 - +1.5 3,825,509 + +0.6 3,825,509 + +0.4 3,825,566 - +0.0 3,825,666 + ECD_03636 0.14 -0.2 3,825,671 + ECD_03636 0.14 -0.1 3,825,678 + ECD_03636 0.15 -0.2 3,825,678 + ECD_03636 0.15 -0.8 3,825,708 + ECD_03636 0.18 -0.3 3,825,708 + ECD_03636 0.18 +0.9 3,825,755 + ECD_03636 0.23 +0.1 3,825,756 - ECD_03636 0.23 +0.3 3,825,762 - ECD_03636 0.23 -0.1 3,825,762 - ECD_03636 0.23 -1.2 3,825,801 + ECD_03636 0.28 -0.5 3,825,801 + ECD_03636 0.28 -0.3 3,825,801 + ECD_03636 0.28 +0.1 3,825,801 + ECD_03636 0.28 -0.6 3,825,802 - ECD_03636 0.28 -1.7 3,825,802 - ECD_03636 0.28 -0.3 3,825,942 - ECD_03636 0.42 +0.6 3,825,965 - ECD_03636 0.45 -0.1 3,825,966 + ECD_03636 0.45 -0.4 3,825,966 + ECD_03636 0.45 -1.5 3,826,096 + ECD_03636 0.58 +0.2 3,826,096 + ECD_03636 0.58 -0.7 3,826,096 + ECD_03636 0.58 -0.1 3,826,097 - ECD_03636 0.58 +1.6 3,826,097 - ECD_03636 0.58 +0.0 3,826,126 + ECD_03636 0.61 +0.1 3,826,127 - ECD_03636 0.61 +0.4 3,826,127 - ECD_03636 0.61 -0.3 3,826,133 - ECD_03636 0.62 +0.7 3,826,133 - ECD_03636 0.62 -0.4 3,826,133 - ECD_03636 0.62 +0.9 3,826,205 - ECD_03636 0.69 +0.0 3,826,291 + ECD_03636 0.78 +3.5 3,826,292 - ECD_03636 0.78 +0.0 3,826,382 + ECD_03636 0.88 +0.1 3,826,399 - ECD_03636 0.89 +1.1 3,826,432 + +0.2 3,826,432 + +1.1 3,826,482 - +0.0 3,826,482 - -0.1 3,826,502 - -0.1 3,826,524 + +0.1 3,826,524 + +2.3 3,826,524 + -1.1 3,826,632 + ECD_03637 0.12 +0.6 3,826,632 + ECD_03637 0.12 +1.3 3,826,632 + ECD_03637 0.12 +0.4 3,826,649 + ECD_03637 0.14 -0.4 3,826,650 - ECD_03637 0.14 +0.0 3,826,693 + ECD_03637 0.19 -0.3 3,826,694 - ECD_03637 0.19 +2.3 3,826,694 - ECD_03637 0.19 -0.2 3,826,695 + ECD_03637 0.19 -1.3 3,826,911 + ECD_03637 0.43 +0.5 3,826,916 + ECD_03637 0.44 +1.1 3,826,916 + ECD_03637 0.44 -0.3 3,826,917 - ECD_03637 0.44 -2.0 3,826,942 + ECD_03637 0.47 +0.6 3,826,942 + ECD_03637 0.47 +0.8 3,826,942 + ECD_03637 0.47 -1.0 3,826,942 + ECD_03637 0.47 -0.2 3,826,942 + ECD_03637 0.47 -1.3 3,826,943 - ECD_03637 0.47 +2.4 3,826,943 - ECD_03637 0.47 -0.8 3,827,001 + ECD_03637 0.53 +1.5 3,827,002 - ECD_03637 0.54 +0.9 3,827,061 + ECD_03637 0.60 +0.9 3,827,062 - ECD_03637 0.60 -1.3 3,827,062 - ECD_03637 0.60 -0.2 3,827,114 + ECD_03637 0.66 +0.4 3,827,114 + ECD_03637 0.66 +0.6 3,827,115 - ECD_03637 0.66 +0.1 3,827,156 + ECD_03637 0.71 +0.0 3,827,247 + ECD_03637 0.81 -0.4 3,827,285 + ECD_03637 0.85 +2.7 3,827,285 + ECD_03637 0.85 -0.7 3,827,286 - ECD_03637 0.85 +1.0 3,827,286 - ECD_03637 0.85 +0.2 3,827,296 - ECD_03637 0.87 -0.6 3,827,347 - -0.5 3,827,347 - +1.0 3,827,376 + +0.1 3,827,377 - +0.9 3,827,414 - +0.4 3,827,414 - +2.0 3,827,431 - +0.1 3,827,431 - -0.5 3,827,448 + +1.3 3,827,448 + +0.9 3,827,448 + +1.5 3,827,448 + +0.2 3,827,448 + -1.1 3,827,448 + -1.2 3,827,448 + +0.9 3,827,449 - -0.2 3,827,449 - -0.9 3,827,452 + +0.1 3,827,452 + +0.0 3,827,453 - -0.7 3,827,453 - +1.0 3,827,453 - -0.6 3,827,453 - +0.4 3,827,475 + +0.3 3,827,475 + -0.2 3,827,476 - -1.0 3,827,476 - +0.8 3,827,476 - +0.0 3,827,476 - +0.8 3,827,476 - -1.9 3,827,478 + -0.6 3,827,478 + -0.8 3,827,478 + -0.5 3,827,479 - -0.3 3,827,479 - -0.5 3,827,479 - -0.1 3,827,480 + -0.2 3,827,481 - +0.4
Or see this region's nucleotide sequence