Strain Fitness in Escherichia coli BL21 around ECD_03421

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03420 and ECD_03421 are separated by 77 nucleotidesECD_03421 and ECD_03422 are separated by 195 nucleotides ECD_03420: ECD_03420 - D-xylose ABC transporter permease, at 3,595,872 to 3,597,053 _03420 ECD_03421: ECD_03421 - xylose divergent operon transcriptional activator, at 3,597,131 to 3,598,309 _03421 ECD_03422: ECD_03422 - putative glucosaminidase, at 3,598,505 to 3,599,329 _03422 Position (kb) 3597 3598 3599Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3596.149 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.152 kb on + strand, within ECD_03420at 3596.153 kb on - strand, within ECD_03420at 3596.153 kb on - strand, within ECD_03420at 3596.153 kb on - strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.204 kb on + strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.205 kb on - strand, within ECD_03420at 3596.206 kb on - strand, within ECD_03420at 3596.289 kb on - strand, within ECD_03420at 3596.289 kb on - strand, within ECD_03420at 3596.327 kb on - strand, within ECD_03420at 3596.327 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.398 kb on - strand, within ECD_03420at 3596.402 kb on - strand, within ECD_03420at 3596.514 kb on - strand, within ECD_03420at 3596.514 kb on - strand, within ECD_03420at 3596.514 kb on - strand, within ECD_03420at 3596.521 kb on + strand, within ECD_03420at 3596.554 kb on + strand, within ECD_03420at 3596.554 kb on + strand, within ECD_03420at 3596.555 kb on - strand, within ECD_03420at 3596.676 kb on + strand, within ECD_03420at 3596.676 kb on + strand, within ECD_03420at 3596.792 kb on + strand, within ECD_03420at 3596.914 kb on + strand, within ECD_03420at 3596.915 kb on - strand, within ECD_03420at 3596.927 kb on + strand, within ECD_03420at 3596.928 kb on - strand, within ECD_03420at 3596.928 kb on - strand, within ECD_03420at 3596.957 kb on + strandat 3596.957 kb on + strandat 3596.957 kb on + strandat 3596.958 kb on - strandat 3596.958 kb on - strandat 3596.958 kb on - strandat 3596.969 kb on - strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.985 kb on + strandat 3596.986 kb on - strandat 3596.986 kb on - strandat 3596.987 kb on + strandat 3597.020 kb on - strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.086 kb on + strandat 3597.087 kb on - strandat 3597.159 kb on + strandat 3597.160 kb on - strandat 3597.182 kb on + strandat 3597.182 kb on + strandat 3597.183 kb on - strandat 3597.183 kb on - strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.198 kb on + strandat 3597.199 kb on - strandat 3597.199 kb on - strandat 3597.199 kb on - strandat 3597.199 kb on - strandat 3597.216 kb on - strandat 3597.219 kb on + strandat 3597.245 kb on - strandat 3597.389 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.422 kb on + strand, within ECD_03421at 3597.423 kb on - strand, within ECD_03421at 3597.437 kb on - strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.440 kb on + strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.441 kb on - strand, within ECD_03421at 3597.472 kb on - strand, within ECD_03421at 3597.503 kb on + strand, within ECD_03421at 3597.551 kb on + strand, within ECD_03421at 3597.663 kb on + strand, within ECD_03421at 3597.663 kb on + strand, within ECD_03421at 3597.691 kb on + strand, within ECD_03421at 3597.721 kb on + strand, within ECD_03421at 3597.721 kb on + strand, within ECD_03421at 3597.721 kb on + strand, within ECD_03421at 3597.722 kb on - strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.732 kb on + strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.733 kb on - strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.744 kb on + strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.745 kb on - strand, within ECD_03421at 3597.748 kb on + strand, within ECD_03421at 3597.748 kb on + strand, within ECD_03421at 3597.748 kb on + strand, within ECD_03421at 3597.749 kb on - strand, within ECD_03421at 3597.888 kb on + strand, within ECD_03421at 3597.891 kb on + strand, within ECD_03421at 3597.891 kb on + strand, within ECD_03421at 3597.892 kb on - strand, within ECD_03421at 3597.895 kb on + strand, within ECD_03421at 3597.895 kb on + strand, within ECD_03421at 3597.896 kb on - strand, within ECD_03421at 3598.007 kb on + strand, within ECD_03421at 3598.007 kb on + strand, within ECD_03421at 3598.008 kb on - strand, within ECD_03421at 3598.016 kb on - strand, within ECD_03421at 3598.036 kb on + strand, within ECD_03421at 3598.050 kb on + strand, within ECD_03421at 3598.097 kb on - strand, within ECD_03421at 3598.256 kb on + strandat 3598.256 kb on + strandat 3598.287 kb on + strandat 3598.291 kb on + strandat 3598.291 kb on + strandat 3598.291 kb on + strandat 3598.291 kb on + strandat 3598.291 kb on + strandat 3598.291 kb on + strandat 3598.308 kb on - strandat 3598.403 kb on + strandat 3598.403 kb on + strandat 3598.404 kb on - strandat 3598.433 kb on - strandat 3598.456 kb on - strandat 3598.485 kb on + strandat 3598.506 kb on + strandat 3598.506 kb on + strandat 3598.506 kb on + strandat 3598.506 kb on + strandat 3598.506 kb on + strandat 3598.507 kb on - strandat 3598.507 kb on - strandat 3598.507 kb on - strandat 3598.507 kb on - strandat 3598.507 kb on - strandat 3598.507 kb on - strandat 3598.507 kb on - strandat 3598.507 kb on - strandat 3598.510 kb on + strandat 3598.510 kb on + strandat 3598.511 kb on - strandat 3598.511 kb on - strandat 3598.511 kb on - strandat 3598.542 kb on + strandat 3598.543 kb on - strandat 3598.557 kb on + strandat 3598.557 kb on + strandat 3598.558 kb on - strandat 3598.558 kb on - strandat 3598.558 kb on - strandat 3598.564 kb on + strandat 3598.565 kb on - strandat 3598.565 kb on - strandat 3598.566 kb on + strandat 3598.566 kb on + strandat 3598.566 kb on + strandat 3598.567 kb on - strandat 3598.639 kb on + strand, within ECD_03422at 3598.688 kb on - strand, within ECD_03422at 3598.688 kb on - strand, within ECD_03422at 3598.704 kb on + strand, within ECD_03422at 3598.705 kb on - strand, within ECD_03422at 3598.705 kb on - strand, within ECD_03422at 3598.732 kb on + strand, within ECD_03422at 3598.732 kb on + strand, within ECD_03422at 3598.756 kb on + strand, within ECD_03422at 3598.771 kb on + strand, within ECD_03422at 3598.772 kb on - strand, within ECD_03422at 3598.873 kb on + strand, within ECD_03422at 3598.910 kb on - strand, within ECD_03422at 3598.930 kb on + strand, within ECD_03422at 3598.930 kb on + strand, within ECD_03422at 3598.934 kb on - strand, within ECD_03422at 3598.953 kb on + strand, within ECD_03422at 3598.954 kb on - strand, within ECD_03422at 3599.066 kb on - strand, within ECD_03422at 3599.070 kb on + strand, within ECD_03422at 3599.071 kb on - strand, within ECD_03422at 3599.078 kb on + strand, within ECD_03422at 3599.121 kb on + strand, within ECD_03422at 3599.122 kb on - strand, within ECD_03422at 3599.146 kb on + strand, within ECD_03422at 3599.147 kb on - strand, within ECD_03422at 3599.170 kb on - strand, within ECD_03422at 3599.187 kb on - strand, within ECD_03422at 3599.187 kb on - strand, within ECD_03422at 3599.198 kb on - strand, within ECD_03422at 3599.198 kb on - strand, within ECD_03422at 3599.198 kb on - strand, within ECD_03422at 3599.200 kb on + strand, within ECD_03422at 3599.201 kb on - strand, within ECD_03422at 3599.201 kb on - strand, within ECD_03422at 3599.201 kb on - strand, within ECD_03422at 3599.201 kb on - strand, within ECD_03422at 3599.206 kb on + strand, within ECD_03422at 3599.206 kb on + strand, within ECD_03422at 3599.282 kb on + strandat 3599.283 kb on - strandat 3599.287 kb on + strandat 3599.287 kb on + strandat 3599.288 kb on - strandat 3599.288 kb on - strandat 3599.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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3,596,149 + ECD_03420 0.23 +0.4
3,596,152 + ECD_03420 0.24 -0.7
3,596,152 + ECD_03420 0.24 -0.1
3,596,152 + ECD_03420 0.24 -0.1
3,596,152 + ECD_03420 0.24 +0.6
3,596,153 - ECD_03420 0.24 -0.2
3,596,153 - ECD_03420 0.24 +0.4
3,596,153 - ECD_03420 0.24 +0.1
3,596,204 + ECD_03420 0.28 +1.0
3,596,204 + ECD_03420 0.28 +0.2
3,596,204 + ECD_03420 0.28 -0.0
3,596,204 + ECD_03420 0.28 +0.3
3,596,204 + ECD_03420 0.28 -1.1
3,596,205 - ECD_03420 0.28 -0.6
3,596,205 - ECD_03420 0.28 -1.5
3,596,205 - ECD_03420 0.28 -0.3
3,596,205 - ECD_03420 0.28 +0.1
3,596,205 - ECD_03420 0.28 +1.5
3,596,205 - ECD_03420 0.28 +0.9
3,596,205 - ECD_03420 0.28 -0.0
3,596,206 - ECD_03420 0.28 +0.1
3,596,289 - ECD_03420 0.35 -0.4
3,596,289 - ECD_03420 0.35 +1.3
3,596,327 - ECD_03420 0.38 +0.9
3,596,327 - ECD_03420 0.38 +0.8
3,596,398 - ECD_03420 0.45 +0.3
3,596,398 - ECD_03420 0.45 +0.5
3,596,398 - ECD_03420 0.45 +1.2
3,596,398 - ECD_03420 0.45 +0.2
3,596,398 - ECD_03420 0.45 +0.3
3,596,398 - ECD_03420 0.45 +0.9
3,596,398 - ECD_03420 0.45 +0.4
3,596,402 - ECD_03420 0.45 -1.7
3,596,514 - ECD_03420 0.54 +0.7
3,596,514 - ECD_03420 0.54 +1.2
3,596,514 - ECD_03420 0.54 +0.4
3,596,521 + ECD_03420 0.55 +0.3
3,596,554 + ECD_03420 0.58 +0.5
3,596,554 + ECD_03420 0.58 +0.7
3,596,555 - ECD_03420 0.58 +0.2
3,596,676 + ECD_03420 0.68 +0.9
3,596,676 + ECD_03420 0.68 -0.5
3,596,792 + ECD_03420 0.78 -0.1
3,596,914 + ECD_03420 0.88 +1.3
3,596,915 - ECD_03420 0.88 -1.0
3,596,927 + ECD_03420 0.89 +0.9
3,596,928 - ECD_03420 0.89 -1.0
3,596,928 - ECD_03420 0.89 +1.0
3,596,957 + -0.7
3,596,957 + -0.1
3,596,957 + -0.8
3,596,958 - -1.1
3,596,958 - +0.5
3,596,958 - +0.7
3,596,969 - -0.3
3,596,985 + +1.7
3,596,985 + -0.8
3,596,985 + -1.1
3,596,985 + +0.5
3,596,985 + +0.3
3,596,985 + -1.9
3,596,986 - +1.9
3,596,986 - +1.2
3,596,987 + +0.9
3,597,020 - +0.9
3,597,086 + +0.4
3,597,086 + +3.8
3,597,086 + +0.0
3,597,086 + -0.3
3,597,086 + +0.2
3,597,086 + +0.4
3,597,087 - +0.4
3,597,159 + +0.3
3,597,160 - -0.7
3,597,182 + -0.8
3,597,182 + +0.7
3,597,183 - +0.4
3,597,183 - +1.7
3,597,198 + -0.6
3,597,198 + +0.1
3,597,198 + +0.0
3,597,198 + +0.2
3,597,198 + -0.1
3,597,199 - -0.6
3,597,199 - +0.6
3,597,199 - -1.1
3,597,199 - -1.1
3,597,216 - +0.2
3,597,219 + +0.9
3,597,245 - +0.6
3,597,389 + ECD_03421 0.22 +1.7
3,597,422 + ECD_03421 0.25 +0.8
3,597,422 + ECD_03421 0.25 +3.0
3,597,422 + ECD_03421 0.25 -0.4
3,597,422 + ECD_03421 0.25 +0.9
3,597,423 - ECD_03421 0.25 +0.3
3,597,437 - ECD_03421 0.26 +0.2
3,597,440 + ECD_03421 0.26 +0.7
3,597,440 + ECD_03421 0.26 -1.1
3,597,440 + ECD_03421 0.26 +0.3
3,597,440 + ECD_03421 0.26 +0.3
3,597,440 + ECD_03421 0.26 +0.6
3,597,440 + ECD_03421 0.26 +0.4
3,597,440 + ECD_03421 0.26 -0.1
3,597,440 + ECD_03421 0.26 +0.8
3,597,441 - ECD_03421 0.26 -0.6
3,597,441 - ECD_03421 0.26 +0.7
3,597,441 - ECD_03421 0.26 -1.0
3,597,441 - ECD_03421 0.26 +0.5
3,597,441 - ECD_03421 0.26 -0.2
3,597,472 - ECD_03421 0.29 -0.9
3,597,503 + ECD_03421 0.32 +0.7
3,597,551 + ECD_03421 0.36 +0.7
3,597,663 + ECD_03421 0.45 -0.5
3,597,663 + ECD_03421 0.45 -0.7
3,597,691 + ECD_03421 0.47 +1.7
3,597,721 + ECD_03421 0.50 +0.3
3,597,721 + ECD_03421 0.50 +1.1
3,597,721 + ECD_03421 0.50 +1.0
3,597,722 - ECD_03421 0.50 +4.0
3,597,732 + ECD_03421 0.51 +0.9
3,597,732 + ECD_03421 0.51 +0.6
3,597,732 + ECD_03421 0.51 +0.7
3,597,732 + ECD_03421 0.51 -0.8
3,597,733 - ECD_03421 0.51 +0.1
3,597,733 - ECD_03421 0.51 +1.0
3,597,733 - ECD_03421 0.51 -0.2
3,597,733 - ECD_03421 0.51 -0.6
3,597,733 - ECD_03421 0.51 +0.6
3,597,744 + ECD_03421 0.52 +2.0
3,597,744 + ECD_03421 0.52 +0.1
3,597,744 + ECD_03421 0.52 -0.1
3,597,744 + ECD_03421 0.52 +0.5
3,597,744 + ECD_03421 0.52 +0.7
3,597,744 + ECD_03421 0.52 +1.0
3,597,745 - ECD_03421 0.52 +0.2
3,597,745 - ECD_03421 0.52 +1.3
3,597,745 - ECD_03421 0.52 -0.4
3,597,745 - ECD_03421 0.52 +0.6
3,597,748 + ECD_03421 0.52 +1.5
3,597,748 + ECD_03421 0.52 +1.0
3,597,748 + ECD_03421 0.52 +0.4
3,597,749 - ECD_03421 0.52 +0.8
3,597,888 + ECD_03421 0.64 +0.8
3,597,891 + ECD_03421 0.64 -0.5
3,597,891 + ECD_03421 0.64 -0.3
3,597,892 - ECD_03421 0.65 +4.3
3,597,895 + ECD_03421 0.65 +1.1
3,597,895 + ECD_03421 0.65 +0.9
3,597,896 - ECD_03421 0.65 +0.3
3,598,007 + ECD_03421 0.74 -0.7
3,598,007 + ECD_03421 0.74 +0.4
3,598,008 - ECD_03421 0.74 +0.1
3,598,016 - ECD_03421 0.75 -0.1
3,598,036 + ECD_03421 0.77 +1.6
3,598,050 + ECD_03421 0.78 +2.0
3,598,097 - ECD_03421 0.82 +0.1
3,598,256 + +0.5
3,598,256 + +0.2
3,598,287 + +0.5
3,598,291 + -0.6
3,598,291 + +1.0
3,598,291 + -0.4
3,598,291 + +1.6
3,598,291 + -0.3
3,598,291 + +0.0
3,598,308 - -1.7
3,598,403 + -0.7
3,598,403 + +0.6
3,598,404 - -0.5
3,598,433 - +0.7
3,598,456 - +1.0
3,598,485 + -0.4
3,598,506 + -0.8
3,598,506 + +0.4
3,598,506 + -1.2
3,598,506 + -0.7
3,598,506 + -0.5
3,598,507 - -0.1
3,598,507 - +4.9
3,598,507 - +0.0
3,598,507 - +0.5
3,598,507 - -0.7
3,598,507 - +0.5
3,598,507 - -0.2
3,598,507 - +0.0
3,598,510 + -1.9
3,598,510 + -0.0
3,598,511 - -0.3
3,598,511 - -0.1
3,598,511 - +1.2
3,598,542 + +0.2
3,598,543 - +0.5
3,598,557 + +0.0
3,598,557 + -2.3
3,598,558 - +0.1
3,598,558 - +0.7
3,598,558 - -1.1
3,598,564 + -1.5
3,598,565 - +0.1
3,598,565 - +0.2
3,598,566 + -2.0
3,598,566 + -1.1
3,598,566 + +0.3
3,598,567 - -0.7
3,598,639 + ECD_03422 0.16 -0.9
3,598,688 - ECD_03422 0.22 +0.7
3,598,688 - ECD_03422 0.22 -0.4
3,598,704 + ECD_03422 0.24 -1.3
3,598,705 - ECD_03422 0.24 -1.0
3,598,705 - ECD_03422 0.24 -1.3
3,598,732 + ECD_03422 0.28 +0.5
3,598,732 + ECD_03422 0.28 +0.7
3,598,756 + ECD_03422 0.30 +0.6
3,598,771 + ECD_03422 0.32 +0.6
3,598,772 - ECD_03422 0.32 +0.2
3,598,873 + ECD_03422 0.45 +2.5
3,598,910 - ECD_03422 0.49 -1.8
3,598,930 + ECD_03422 0.52 -0.9
3,598,930 + ECD_03422 0.52 +0.1
3,598,934 - ECD_03422 0.52 -0.2
3,598,953 + ECD_03422 0.54 +0.6
3,598,954 - ECD_03422 0.54 -0.1
3,599,066 - ECD_03422 0.68 -0.9
3,599,070 + ECD_03422 0.68 +0.2
3,599,071 - ECD_03422 0.69 -0.1
3,599,078 + ECD_03422 0.69 -2.2
3,599,121 + ECD_03422 0.75 -0.6
3,599,122 - ECD_03422 0.75 +0.3
3,599,146 + ECD_03422 0.78 +1.6
3,599,147 - ECD_03422 0.78 -0.8
3,599,170 - ECD_03422 0.81 -0.8
3,599,187 - ECD_03422 0.83 -0.7
3,599,187 - ECD_03422 0.83 -0.4
3,599,198 - ECD_03422 0.84 +0.1
3,599,198 - ECD_03422 0.84 -1.0
3,599,198 - ECD_03422 0.84 +0.1
3,599,200 + ECD_03422 0.84 +1.0
3,599,201 - ECD_03422 0.84 -1.4
3,599,201 - ECD_03422 0.84 -0.4
3,599,201 - ECD_03422 0.84 -0.0
3,599,201 - ECD_03422 0.84 +0.4
3,599,206 + ECD_03422 0.85 -0.4
3,599,206 + ECD_03422 0.85 -0.3
3,599,282 + +0.4
3,599,283 - -0.9
3,599,287 + +0.7
3,599,287 + -1.8
3,599,288 - +3.4
3,599,288 - +0.1
3,599,288 - -1.8

Or see this region's nucleotide sequence