Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03367 and ECD_03368 are separated by 50 nucleotides ECD_03368 and ECD_03369 are separated by 447 nucleotides
ECD_03367: ECD_03367 - cytoplasmic trehalase, at 3,530,780 to 3,532,429
_03367
ECD_03368: ECD_03368 - putative DNA-binding transcriptional response regulator, at 3,532,480 to 3,533,082
_03368
ECD_03369: ECD_03369 - LysR family putative transcriptional regulator, at 3,533,530 to 3,534,501
_03369
Position (kb)
3532
3533
3534 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3531.526 kb on + strand, within ECD_03367 at 3531.527 kb on - strand, within ECD_03367 at 3531.536 kb on + strand, within ECD_03367 at 3531.537 kb on - strand, within ECD_03367 at 3531.537 kb on - strand, within ECD_03367 at 3531.574 kb on + strand, within ECD_03367 at 3531.584 kb on + strand, within ECD_03367 at 3531.719 kb on + strand, within ECD_03367 at 3531.758 kb on + strand, within ECD_03367 at 3531.759 kb on - strand, within ECD_03367 at 3531.759 kb on - strand, within ECD_03367 at 3531.782 kb on - strand, within ECD_03367 at 3531.805 kb on + strand, within ECD_03367 at 3531.980 kb on + strand, within ECD_03367 at 3532.047 kb on - strand, within ECD_03367 at 3532.095 kb on + strand, within ECD_03367 at 3532.163 kb on - strand, within ECD_03367 at 3532.185 kb on + strand, within ECD_03367 at 3532.185 kb on + strand, within ECD_03367 at 3532.186 kb on - strand, within ECD_03367 at 3532.211 kb on - strand, within ECD_03367 at 3532.217 kb on + strand, within ECD_03367 at 3532.218 kb on - strand, within ECD_03367 at 3532.310 kb on + strand at 3532.427 kb on + strand at 3532.431 kb on - strand at 3532.491 kb on + strand at 3532.491 kb on + strand at 3532.491 kb on + strand at 3532.492 kb on - strand at 3532.492 kb on - strand at 3532.495 kb on + strand at 3532.496 kb on - strand at 3532.564 kb on + strand, within ECD_03368 at 3532.674 kb on + strand, within ECD_03368 at 3532.674 kb on + strand, within ECD_03368 at 3532.675 kb on - strand, within ECD_03368 at 3532.738 kb on - strand, within ECD_03368 at 3532.738 kb on - strand, within ECD_03368 at 3532.797 kb on + strand, within ECD_03368 at 3532.807 kb on - strand, within ECD_03368 at 3532.816 kb on + strand, within ECD_03368 at 3532.898 kb on + strand, within ECD_03368 at 3532.932 kb on + strand, within ECD_03368 at 3532.932 kb on + strand, within ECD_03368 at 3532.933 kb on - strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.936 kb on + strand, within ECD_03368 at 3532.937 kb on - strand, within ECD_03368 at 3532.937 kb on - strand, within ECD_03368 at 3532.970 kb on - strand, within ECD_03368 at 3533.013 kb on + strand, within ECD_03368 at 3533.046 kb on + strand at 3533.050 kb on + strand at 3533.075 kb on - strand at 3533.075 kb on - strand at 3533.219 kb on + strand at 3533.220 kb on - strand at 3533.220 kb on - strand at 3533.289 kb on - strand at 3533.289 kb on - strand at 3533.462 kb on + strand at 3533.568 kb on - strand at 3533.711 kb on + strand, within ECD_03369 at 3533.711 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.794 kb on + strand, within ECD_03369 at 3533.795 kb on - strand, within ECD_03369 at 3533.795 kb on - strand, within ECD_03369 at 3533.798 kb on - strand, within ECD_03369 at 3533.869 kb on - strand, within ECD_03369 at 3533.869 kb on - strand, within ECD_03369 at 3533.883 kb on - strand, within ECD_03369 at 3533.921 kb on + strand, within ECD_03369 at 3533.997 kb on - strand, within ECD_03369 at 3534.000 kb on + strand, within ECD_03369
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,531,526 + ECD_03367 0.45 -0.0 3,531,527 - ECD_03367 0.45 +0.9 3,531,536 + ECD_03367 0.46 -0.9 3,531,537 - ECD_03367 0.46 +0.9 3,531,537 - ECD_03367 0.46 -0.1 3,531,574 + ECD_03367 0.48 +0.1 3,531,584 + ECD_03367 0.49 +1.2 3,531,719 + ECD_03367 0.57 +0.3 3,531,758 + ECD_03367 0.59 -0.1 3,531,759 - ECD_03367 0.59 +0.1 3,531,759 - ECD_03367 0.59 +0.4 3,531,782 - ECD_03367 0.61 -0.0 3,531,805 + ECD_03367 0.62 -1.3 3,531,980 + ECD_03367 0.73 +1.2 3,532,047 - ECD_03367 0.77 -0.6 3,532,095 + ECD_03367 0.80 +1.3 3,532,163 - ECD_03367 0.84 +0.7 3,532,185 + ECD_03367 0.85 +1.3 3,532,185 + ECD_03367 0.85 +0.1 3,532,186 - ECD_03367 0.85 +1.2 3,532,211 - ECD_03367 0.87 +0.4 3,532,217 + ECD_03367 0.87 -0.1 3,532,218 - ECD_03367 0.87 +0.9 3,532,310 + -0.2 3,532,427 + +0.6 3,532,431 - +0.8 3,532,491 + +0.3 3,532,491 + +0.8 3,532,491 + +0.2 3,532,492 - +2.2 3,532,492 - +0.8 3,532,495 + +0.0 3,532,496 - -0.6 3,532,564 + ECD_03368 0.14 +0.4 3,532,674 + ECD_03368 0.32 +0.5 3,532,674 + ECD_03368 0.32 +0.4 3,532,675 - ECD_03368 0.32 +1.2 3,532,738 - ECD_03368 0.43 +0.7 3,532,738 - ECD_03368 0.43 -0.8 3,532,797 + ECD_03368 0.53 -0.1 3,532,807 - ECD_03368 0.54 -0.2 3,532,816 + ECD_03368 0.56 +0.6 3,532,898 + ECD_03368 0.69 +2.6 3,532,932 + ECD_03368 0.75 -0.7 3,532,932 + ECD_03368 0.75 +0.5 3,532,933 - ECD_03368 0.75 +0.0 3,532,936 + ECD_03368 0.76 -0.1 3,532,936 + ECD_03368 0.76 +0.3 3,532,936 + ECD_03368 0.76 -0.6 3,532,936 + ECD_03368 0.76 +0.1 3,532,936 + ECD_03368 0.76 +0.5 3,532,937 - ECD_03368 0.76 -0.6 3,532,937 - ECD_03368 0.76 -0.8 3,532,970 - ECD_03368 0.81 -0.5 3,533,013 + ECD_03368 0.88 +0.3 3,533,046 + +1.9 3,533,050 + +0.3 3,533,075 - +0.2 3,533,075 - +0.4 3,533,219 + +0.1 3,533,220 - +1.0 3,533,220 - -0.7 3,533,289 - -0.0 3,533,289 - -0.5 3,533,462 + +0.0 3,533,568 - +0.8 3,533,711 + ECD_03369 0.19 +0.7 3,533,711 + ECD_03369 0.19 -0.4 3,533,794 + ECD_03369 0.27 +0.7 3,533,794 + ECD_03369 0.27 -1.8 3,533,794 + ECD_03369 0.27 +0.2 3,533,794 + ECD_03369 0.27 -0.3 3,533,795 - ECD_03369 0.27 +1.3 3,533,795 - ECD_03369 0.27 -0.5 3,533,798 - ECD_03369 0.28 -1.1 3,533,869 - ECD_03369 0.35 +0.3 3,533,869 - ECD_03369 0.35 +0.0 3,533,883 - ECD_03369 0.36 -0.5 3,533,921 + ECD_03369 0.40 +0.8 3,533,997 - ECD_03369 0.48 +1.5 3,534,000 + ECD_03369 0.48 +0.7
Or see this region's nucleotide sequence