Experiment: CM1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03287 and ECD_03288 are separated by 3 nucleotides ECD_03288 and ECD_03289 are separated by 138 nucleotides
ECD_03287: ECD_03287 - gluconate transporter, low affinity GNT 1 system, at 3,438,870 to 3,440,210
_03287
ECD_03288: ECD_03288 - gluconate kinase 2, at 3,440,214 to 3,440,741
_03288
ECD_03289: ECD_03289 - d-gluconate inducible gluconate regulon transcriptional repressor, at 3,440,880 to 3,441,875
_03289
Position (kb)
3440
3441 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3439.237 kb on - strand, within ECD_03287 at 3439.375 kb on + strand, within ECD_03287 at 3439.376 kb on - strand, within ECD_03287 at 3439.376 kb on - strand, within ECD_03287 at 3439.425 kb on - strand, within ECD_03287 at 3439.449 kb on - strand, within ECD_03287 at 3439.600 kb on + strand, within ECD_03287 at 3439.617 kb on - strand, within ECD_03287 at 3439.617 kb on - strand, within ECD_03287 at 3439.903 kb on + strand, within ECD_03287 at 3439.932 kb on - strand, within ECD_03287 at 3439.975 kb on - strand, within ECD_03287 at 3439.975 kb on - strand, within ECD_03287 at 3439.989 kb on + strand, within ECD_03287 at 3439.991 kb on + strand, within ECD_03287 at 3439.991 kb on + strand, within ECD_03287 at 3439.991 kb on + strand, within ECD_03287 at 3439.992 kb on - strand, within ECD_03287 at 3440.136 kb on - strand at 3440.166 kb on + strand at 3440.167 kb on - strand at 3440.178 kb on + strand at 3440.188 kb on - strand at 3440.205 kb on - strand at 3440.205 kb on - strand at 3440.205 kb on - strand at 3440.212 kb on - strand at 3440.216 kb on - strand at 3440.228 kb on + strand at 3440.232 kb on - strand at 3440.290 kb on - strand, within ECD_03288 at 3440.290 kb on - strand, within ECD_03288 at 3440.290 kb on - strand, within ECD_03288 at 3440.290 kb on - strand, within ECD_03288 at 3440.290 kb on - strand, within ECD_03288 at 3440.417 kb on - strand, within ECD_03288 at 3440.417 kb on - strand, within ECD_03288 at 3440.417 kb on - strand, within ECD_03288 at 3440.501 kb on + strand, within ECD_03288 at 3440.502 kb on - strand, within ECD_03288 at 3440.710 kb on + strand at 3440.711 kb on - strand at 3440.711 kb on - strand at 3440.711 kb on - strand at 3440.843 kb on + strand at 3440.849 kb on + strand at 3440.849 kb on + strand at 3440.850 kb on - strand at 3440.850 kb on - strand at 3440.852 kb on - strand at 3440.852 kb on - strand at 3440.863 kb on - strand at 3440.882 kb on - strand at 3440.882 kb on - strand at 3440.882 kb on - strand at 3440.886 kb on - strand at 3440.914 kb on - strand at 3440.978 kb on + strand at 3441.007 kb on - strand, within ECD_03289 at 3441.088 kb on - strand, within ECD_03289 at 3441.137 kb on + strand, within ECD_03289 at 3441.137 kb on + strand, within ECD_03289 at 3441.137 kb on + strand, within ECD_03289 at 3441.138 kb on - strand, within ECD_03289 at 3441.141 kb on - strand, within ECD_03289 at 3441.141 kb on - strand, within ECD_03289 at 3441.141 kb on - strand, within ECD_03289 at 3441.208 kb on + strand, within ECD_03289 at 3441.208 kb on + strand, within ECD_03289 at 3441.236 kb on + strand, within ECD_03289 at 3441.236 kb on + strand, within ECD_03289 at 3441.236 kb on + strand, within ECD_03289 at 3441.236 kb on + strand, within ECD_03289 at 3441.236 kb on + strand, within ECD_03289 at 3441.236 kb on + strand, within ECD_03289 at 3441.237 kb on - strand, within ECD_03289 at 3441.293 kb on + strand, within ECD_03289 at 3441.293 kb on + strand, within ECD_03289 at 3441.293 kb on + strand, within ECD_03289 at 3441.294 kb on - strand, within ECD_03289 at 3441.294 kb on - strand, within ECD_03289 at 3441.296 kb on + strand, within ECD_03289 at 3441.296 kb on + strand, within ECD_03289 at 3441.296 kb on + strand, within ECD_03289 at 3441.296 kb on + strand, within ECD_03289 at 3441.297 kb on - strand, within ECD_03289 at 3441.297 kb on - strand, within ECD_03289 at 3441.297 kb on - strand, within ECD_03289 at 3441.297 kb on - strand, within ECD_03289 at 3441.297 kb on - strand, within ECD_03289 at 3441.322 kb on + strand, within ECD_03289 at 3441.350 kb on + strand, within ECD_03289 at 3441.387 kb on - strand, within ECD_03289 at 3441.491 kb on + strand, within ECD_03289 at 3441.491 kb on + strand, within ECD_03289 at 3441.567 kb on - strand, within ECD_03289 at 3441.568 kb on + strand, within ECD_03289 at 3441.574 kb on + strand, within ECD_03289 at 3441.574 kb on + strand, within ECD_03289 at 3441.633 kb on + strand, within ECD_03289 at 3441.634 kb on - strand, within ECD_03289 at 3441.634 kb on - strand, within ECD_03289 at 3441.666 kb on + strand, within ECD_03289 at 3441.730 kb on + strand, within ECD_03289 at 3441.731 kb on - strand, within ECD_03289 at 3441.731 kb on - strand, within ECD_03289 at 3441.731 kb on - strand, within ECD_03289
Per-strain Table
Position Strand Gene LocusTag Fraction CM1 remove 3,439,237 - ECD_03287 0.27 +0.9 3,439,375 + ECD_03287 0.38 +0.7 3,439,376 - ECD_03287 0.38 +1.0 3,439,376 - ECD_03287 0.38 +0.6 3,439,425 - ECD_03287 0.41 +0.0 3,439,449 - ECD_03287 0.43 +0.6 3,439,600 + ECD_03287 0.54 +0.9 3,439,617 - ECD_03287 0.56 +0.5 3,439,617 - ECD_03287 0.56 -0.6 3,439,903 + ECD_03287 0.77 +1.1 3,439,932 - ECD_03287 0.79 -0.1 3,439,975 - ECD_03287 0.82 -0.2 3,439,975 - ECD_03287 0.82 -0.1 3,439,989 + ECD_03287 0.83 +0.6 3,439,991 + ECD_03287 0.84 +0.4 3,439,991 + ECD_03287 0.84 -0.4 3,439,991 + ECD_03287 0.84 +1.4 3,439,992 - ECD_03287 0.84 -0.9 3,440,136 - +0.2 3,440,166 + +1.1 3,440,167 - +1.3 3,440,178 + -0.1 3,440,188 - -0.2 3,440,205 - +0.2 3,440,205 - -0.3 3,440,205 - +0.4 3,440,212 - +0.1 3,440,216 - -0.9 3,440,228 + +0.9 3,440,232 - -0.1 3,440,290 - ECD_03288 0.14 +0.6 3,440,290 - ECD_03288 0.14 +1.7 3,440,290 - ECD_03288 0.14 -0.2 3,440,290 - ECD_03288 0.14 +1.4 3,440,290 - ECD_03288 0.14 +1.0 3,440,417 - ECD_03288 0.38 +0.4 3,440,417 - ECD_03288 0.38 +1.3 3,440,417 - ECD_03288 0.38 +0.9 3,440,501 + ECD_03288 0.54 +0.8 3,440,502 - ECD_03288 0.55 -0.1 3,440,710 + +0.4 3,440,711 - +1.1 3,440,711 - +2.3 3,440,711 - +1.0 3,440,843 + +0.2 3,440,849 + +1.0 3,440,849 + +0.1 3,440,850 - +0.6 3,440,850 - +0.9 3,440,852 - -1.0 3,440,852 - +0.9 3,440,863 - +0.8 3,440,882 - +0.8 3,440,882 - -0.5 3,440,882 - +0.9 3,440,886 - -2.4 3,440,914 - -2.2 3,440,978 + +1.2 3,441,007 - ECD_03289 0.13 -1.2 3,441,088 - ECD_03289 0.21 +0.0 3,441,137 + ECD_03289 0.26 -2.0 3,441,137 + ECD_03289 0.26 +0.1 3,441,137 + ECD_03289 0.26 +0.4 3,441,138 - ECD_03289 0.26 -0.5 3,441,141 - ECD_03289 0.26 +0.3 3,441,141 - ECD_03289 0.26 -0.5 3,441,141 - ECD_03289 0.26 -1.4 3,441,208 + ECD_03289 0.33 -0.2 3,441,208 + ECD_03289 0.33 -2.4 3,441,236 + ECD_03289 0.36 -0.0 3,441,236 + ECD_03289 0.36 -1.1 3,441,236 + ECD_03289 0.36 -0.6 3,441,236 + ECD_03289 0.36 -2.0 3,441,236 + ECD_03289 0.36 +1.0 3,441,236 + ECD_03289 0.36 +0.1 3,441,237 - ECD_03289 0.36 -2.5 3,441,293 + ECD_03289 0.41 -0.3 3,441,293 + ECD_03289 0.41 -1.1 3,441,293 + ECD_03289 0.41 -1.6 3,441,294 - ECD_03289 0.42 -0.6 3,441,294 - ECD_03289 0.42 -0.3 3,441,296 + ECD_03289 0.42 -0.0 3,441,296 + ECD_03289 0.42 -0.0 3,441,296 + ECD_03289 0.42 -0.8 3,441,296 + ECD_03289 0.42 -1.0 3,441,297 - ECD_03289 0.42 -0.2 3,441,297 - ECD_03289 0.42 -1.1 3,441,297 - ECD_03289 0.42 -0.9 3,441,297 - ECD_03289 0.42 -0.0 3,441,297 - ECD_03289 0.42 +0.6 3,441,322 + ECD_03289 0.44 -0.4 3,441,350 + ECD_03289 0.47 -0.8 3,441,387 - ECD_03289 0.51 -1.3 3,441,491 + ECD_03289 0.61 -0.8 3,441,491 + ECD_03289 0.61 -1.7 3,441,567 - ECD_03289 0.69 -1.3 3,441,568 + ECD_03289 0.69 -2.1 3,441,574 + ECD_03289 0.70 -0.9 3,441,574 + ECD_03289 0.70 -0.7 3,441,633 + ECD_03289 0.76 -0.7 3,441,634 - ECD_03289 0.76 -2.8 3,441,634 - ECD_03289 0.76 -0.4 3,441,666 + ECD_03289 0.79 +0.5 3,441,730 + ECD_03289 0.85 -1.0 3,441,731 - ECD_03289 0.85 -1.3 3,441,731 - ECD_03289 0.85 -0.7 3,441,731 - ECD_03289 0.85 -1.1
Or see this region's nucleotide sequence