Strain Fitness in Escherichia coli BL21 around ECD_03288

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03287 and ECD_03288 are separated by 3 nucleotidesECD_03288 and ECD_03289 are separated by 138 nucleotides ECD_03287: ECD_03287 - gluconate transporter, low affinity GNT 1 system, at 3,438,870 to 3,440,210 _03287 ECD_03288: ECD_03288 - gluconate kinase 2, at 3,440,214 to 3,440,741 _03288 ECD_03289: ECD_03289 - d-gluconate inducible gluconate regulon transcriptional repressor, at 3,440,880 to 3,441,875 _03289 Position (kb) 3440 3441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3439.237 kb on - strand, within ECD_03287at 3439.375 kb on + strand, within ECD_03287at 3439.376 kb on - strand, within ECD_03287at 3439.376 kb on - strand, within ECD_03287at 3439.425 kb on - strand, within ECD_03287at 3439.449 kb on - strand, within ECD_03287at 3439.600 kb on + strand, within ECD_03287at 3439.617 kb on - strand, within ECD_03287at 3439.617 kb on - strand, within ECD_03287at 3439.903 kb on + strand, within ECD_03287at 3439.932 kb on - strand, within ECD_03287at 3439.975 kb on - strand, within ECD_03287at 3439.975 kb on - strand, within ECD_03287at 3439.989 kb on + strand, within ECD_03287at 3439.991 kb on + strand, within ECD_03287at 3439.991 kb on + strand, within ECD_03287at 3439.991 kb on + strand, within ECD_03287at 3439.992 kb on - strand, within ECD_03287at 3440.136 kb on - strandat 3440.166 kb on + strandat 3440.167 kb on - strandat 3440.178 kb on + strandat 3440.188 kb on - strandat 3440.205 kb on - strandat 3440.205 kb on - strandat 3440.205 kb on - strandat 3440.212 kb on - strandat 3440.216 kb on - strandat 3440.228 kb on + strandat 3440.232 kb on - strandat 3440.290 kb on - strand, within ECD_03288at 3440.290 kb on - strand, within ECD_03288at 3440.290 kb on - strand, within ECD_03288at 3440.290 kb on - strand, within ECD_03288at 3440.290 kb on - strand, within ECD_03288at 3440.417 kb on - strand, within ECD_03288at 3440.417 kb on - strand, within ECD_03288at 3440.417 kb on - strand, within ECD_03288at 3440.501 kb on + strand, within ECD_03288at 3440.502 kb on - strand, within ECD_03288at 3440.710 kb on + strandat 3440.711 kb on - strandat 3440.711 kb on - strandat 3440.711 kb on - strandat 3440.843 kb on + strandat 3440.849 kb on + strandat 3440.849 kb on + strandat 3440.850 kb on - strandat 3440.850 kb on - strandat 3440.852 kb on - strandat 3440.852 kb on - strandat 3440.863 kb on - strandat 3440.882 kb on - strandat 3440.882 kb on - strandat 3440.882 kb on - strandat 3440.886 kb on - strandat 3440.914 kb on - strandat 3440.978 kb on + strandat 3441.007 kb on - strand, within ECD_03289at 3441.088 kb on - strand, within ECD_03289at 3441.137 kb on + strand, within ECD_03289at 3441.137 kb on + strand, within ECD_03289at 3441.137 kb on + strand, within ECD_03289at 3441.138 kb on - strand, within ECD_03289at 3441.141 kb on - strand, within ECD_03289at 3441.141 kb on - strand, within ECD_03289at 3441.141 kb on - strand, within ECD_03289at 3441.208 kb on + strand, within ECD_03289at 3441.208 kb on + strand, within ECD_03289at 3441.236 kb on + strand, within ECD_03289at 3441.236 kb on + strand, within ECD_03289at 3441.236 kb on + strand, within ECD_03289at 3441.236 kb on + strand, within ECD_03289at 3441.236 kb on + strand, within ECD_03289at 3441.236 kb on + strand, within ECD_03289at 3441.237 kb on - strand, within ECD_03289at 3441.293 kb on + strand, within ECD_03289at 3441.293 kb on + strand, within ECD_03289at 3441.293 kb on + strand, within ECD_03289at 3441.294 kb on - strand, within ECD_03289at 3441.294 kb on - strand, within ECD_03289at 3441.296 kb on + strand, within ECD_03289at 3441.296 kb on + strand, within ECD_03289at 3441.296 kb on + strand, within ECD_03289at 3441.296 kb on + strand, within ECD_03289at 3441.297 kb on - strand, within ECD_03289at 3441.297 kb on - strand, within ECD_03289at 3441.297 kb on - strand, within ECD_03289at 3441.297 kb on - strand, within ECD_03289at 3441.297 kb on - strand, within ECD_03289at 3441.322 kb on + strand, within ECD_03289at 3441.350 kb on + strand, within ECD_03289at 3441.387 kb on - strand, within ECD_03289at 3441.491 kb on + strand, within ECD_03289at 3441.491 kb on + strand, within ECD_03289at 3441.567 kb on - strand, within ECD_03289at 3441.568 kb on + strand, within ECD_03289at 3441.574 kb on + strand, within ECD_03289at 3441.574 kb on + strand, within ECD_03289at 3441.633 kb on + strand, within ECD_03289at 3441.634 kb on - strand, within ECD_03289at 3441.634 kb on - strand, within ECD_03289at 3441.666 kb on + strand, within ECD_03289at 3441.730 kb on + strand, within ECD_03289at 3441.731 kb on - strand, within ECD_03289at 3441.731 kb on - strand, within ECD_03289at 3441.731 kb on - strand, within ECD_03289

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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3,439,237 - ECD_03287 0.27 +0.9
3,439,375 + ECD_03287 0.38 +0.7
3,439,376 - ECD_03287 0.38 +1.0
3,439,376 - ECD_03287 0.38 +0.6
3,439,425 - ECD_03287 0.41 +0.0
3,439,449 - ECD_03287 0.43 +0.6
3,439,600 + ECD_03287 0.54 +0.9
3,439,617 - ECD_03287 0.56 +0.5
3,439,617 - ECD_03287 0.56 -0.6
3,439,903 + ECD_03287 0.77 +1.1
3,439,932 - ECD_03287 0.79 -0.1
3,439,975 - ECD_03287 0.82 -0.2
3,439,975 - ECD_03287 0.82 -0.1
3,439,989 + ECD_03287 0.83 +0.6
3,439,991 + ECD_03287 0.84 +0.4
3,439,991 + ECD_03287 0.84 -0.4
3,439,991 + ECD_03287 0.84 +1.4
3,439,992 - ECD_03287 0.84 -0.9
3,440,136 - +0.2
3,440,166 + +1.1
3,440,167 - +1.3
3,440,178 + -0.1
3,440,188 - -0.2
3,440,205 - +0.2
3,440,205 - -0.3
3,440,205 - +0.4
3,440,212 - +0.1
3,440,216 - -0.9
3,440,228 + +0.9
3,440,232 - -0.1
3,440,290 - ECD_03288 0.14 +0.6
3,440,290 - ECD_03288 0.14 +1.7
3,440,290 - ECD_03288 0.14 -0.2
3,440,290 - ECD_03288 0.14 +1.4
3,440,290 - ECD_03288 0.14 +1.0
3,440,417 - ECD_03288 0.38 +0.4
3,440,417 - ECD_03288 0.38 +1.3
3,440,417 - ECD_03288 0.38 +0.9
3,440,501 + ECD_03288 0.54 +0.8
3,440,502 - ECD_03288 0.55 -0.1
3,440,710 + +0.4
3,440,711 - +1.1
3,440,711 - +2.3
3,440,711 - +1.0
3,440,843 + +0.2
3,440,849 + +1.0
3,440,849 + +0.1
3,440,850 - +0.6
3,440,850 - +0.9
3,440,852 - -1.0
3,440,852 - +0.9
3,440,863 - +0.8
3,440,882 - +0.8
3,440,882 - -0.5
3,440,882 - +0.9
3,440,886 - -2.4
3,440,914 - -2.2
3,440,978 + +1.2
3,441,007 - ECD_03289 0.13 -1.2
3,441,088 - ECD_03289 0.21 +0.0
3,441,137 + ECD_03289 0.26 -2.0
3,441,137 + ECD_03289 0.26 +0.1
3,441,137 + ECD_03289 0.26 +0.4
3,441,138 - ECD_03289 0.26 -0.5
3,441,141 - ECD_03289 0.26 +0.3
3,441,141 - ECD_03289 0.26 -0.5
3,441,141 - ECD_03289 0.26 -1.4
3,441,208 + ECD_03289 0.33 -0.2
3,441,208 + ECD_03289 0.33 -2.4
3,441,236 + ECD_03289 0.36 -0.0
3,441,236 + ECD_03289 0.36 -1.1
3,441,236 + ECD_03289 0.36 -0.6
3,441,236 + ECD_03289 0.36 -2.0
3,441,236 + ECD_03289 0.36 +1.0
3,441,236 + ECD_03289 0.36 +0.1
3,441,237 - ECD_03289 0.36 -2.5
3,441,293 + ECD_03289 0.41 -0.3
3,441,293 + ECD_03289 0.41 -1.1
3,441,293 + ECD_03289 0.41 -1.6
3,441,294 - ECD_03289 0.42 -0.6
3,441,294 - ECD_03289 0.42 -0.3
3,441,296 + ECD_03289 0.42 -0.0
3,441,296 + ECD_03289 0.42 -0.0
3,441,296 + ECD_03289 0.42 -0.8
3,441,296 + ECD_03289 0.42 -1.0
3,441,297 - ECD_03289 0.42 -0.2
3,441,297 - ECD_03289 0.42 -1.1
3,441,297 - ECD_03289 0.42 -0.9
3,441,297 - ECD_03289 0.42 -0.0
3,441,297 - ECD_03289 0.42 +0.6
3,441,322 + ECD_03289 0.44 -0.4
3,441,350 + ECD_03289 0.47 -0.8
3,441,387 - ECD_03289 0.51 -1.3
3,441,491 + ECD_03289 0.61 -0.8
3,441,491 + ECD_03289 0.61 -1.7
3,441,567 - ECD_03289 0.69 -1.3
3,441,568 + ECD_03289 0.69 -2.1
3,441,574 + ECD_03289 0.70 -0.9
3,441,574 + ECD_03289 0.70 -0.7
3,441,633 + ECD_03289 0.76 -0.7
3,441,634 - ECD_03289 0.76 -2.8
3,441,634 - ECD_03289 0.76 -0.4
3,441,666 + ECD_03289 0.79 +0.5
3,441,730 + ECD_03289 0.85 -1.0
3,441,731 - ECD_03289 0.85 -1.3
3,441,731 - ECD_03289 0.85 -0.7
3,441,731 - ECD_03289 0.85 -1.1

Or see this region's nucleotide sequence