Strain Fitness in Escherichia coli BL21 around ECD_03068

Experiment: CM1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03067 and ECD_03068 are separated by 22 nucleotidesECD_03068 and ECD_03069 are separated by 117 nucleotidesECD_03069 and ECD_03070 are separated by 45 nucleotides ECD_03067: ECD_03067 - RNA polymerase, sigma 54 (sigma N) factor, at 3,213,217 to 3,214,650 _03067 ECD_03068: ECD_03068 - ribosome hibernation promoting factor HPF; stabilizes 100S dimers, at 3,214,673 to 3,214,960 _03068 ECD_03069: ECD_03069 - sugar-specific enzyme IIA component of PTS, at 3,215,078 to 3,215,569 _03069 ECD_03070: ECD_03070 - adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase, at 3,215,615 to 3,216,469 _03070 Position (kb) 3214 3215Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 3214.123 kb on + strand, within ECD_03067at 3214.123 kb on + strand, within ECD_03067at 3214.496 kb on + strand, within ECD_03067at 3214.635 kb on + strandat 3214.672 kb on + strandat 3214.784 kb on + strand, within ECD_03068at 3214.784 kb on + strand, within ECD_03068at 3214.839 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.883 kb on + strand, within ECD_03068at 3214.909 kb on + strand, within ECD_03068at 3214.936 kb on + strandat 3214.936 kb on + strandat 3214.936 kb on + strandat 3214.958 kb on + strandat 3214.958 kb on + strandat 3214.958 kb on + strandat 3214.974 kb on + strandat 3215.019 kb on + strandat 3215.428 kb on + strand, within ECD_03069at 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.567 kb on + strandat 3215.590 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.612 kb on + strandat 3215.613 kb on - strandat 3215.788 kb on + strand, within ECD_03070at 3215.811 kb on + strand, within ECD_03070at 3215.881 kb on + strand, within ECD_03070at 3215.889 kb on + strand, within ECD_03070at 3215.889 kb on + strand, within ECD_03070

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Per-strain Table

Position Strand Gene LocusTag Fraction CM1
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3,214,123 + ECD_03067 0.63 +2.0
3,214,123 + ECD_03067 0.63 +0.6
3,214,496 + ECD_03067 0.89 -0.1
3,214,635 + +0.5
3,214,672 + -1.0
3,214,784 + ECD_03068 0.39 -0.4
3,214,784 + ECD_03068 0.39 +0.1
3,214,839 + ECD_03068 0.58 -0.6
3,214,883 + ECD_03068 0.73 +3.4
3,214,883 + ECD_03068 0.73 -0.4
3,214,883 + ECD_03068 0.73 +0.2
3,214,883 + ECD_03068 0.73 +1.6
3,214,883 + ECD_03068 0.73 +4.8
3,214,883 + ECD_03068 0.73 -0.3
3,214,883 + ECD_03068 0.73 -0.9
3,214,909 + ECD_03068 0.82 +4.6
3,214,936 + -0.4
3,214,936 + +0.2
3,214,936 + -0.1
3,214,958 + +3.7
3,214,958 + +0.9
3,214,958 + +0.3
3,214,974 + +0.4
3,215,019 + -0.1
3,215,428 + ECD_03069 0.71 +2.9
3,215,567 + +0.1
3,215,567 + +0.6
3,215,567 + -0.1
3,215,567 + -0.8
3,215,590 + +0.6
3,215,612 + +0.2
3,215,612 + +2.4
3,215,612 + +0.7
3,215,612 + +0.4
3,215,612 + +4.1
3,215,613 - +3.6
3,215,788 + ECD_03070 0.20 +0.4
3,215,811 + ECD_03070 0.23 +1.5
3,215,881 + ECD_03070 0.31 +0.2
3,215,889 + ECD_03070 0.32 -0.6
3,215,889 + ECD_03070 0.32 +1.2

Or see this region's nucleotide sequence