Strain Fitness in Escherichia coli BL21 around ECD_03042

Experiment: CM1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03041 and ECD_03042 overlap by 8 nucleotidesECD_03042 and ECD_03043 are separated by 89 nucleotides ECD_03041: ECD_03041 - phosphoglucosamine mutase, at 3,191,232 to 3,192,569 _03041 ECD_03042: ECD_03042 - 7,8-dihydropteroate synthase, at 3,192,562 to 3,193,410 _03042 ECD_03043: ECD_03043 - protease, ATP-dependent zinc-metallo, at 3,193,500 to 3,195,434 _03043 Position (kb) 3192 3193 3194Strain fitness (log2 ratio) -1 0 1 2 3at 3193.436 kb on - strandat 3193.479 kb on - strandat 3193.502 kb on - strandat 3193.502 kb on - strandat 3193.502 kb on - strandat 3193.502 kb on - strandat 3193.502 kb on - strandat 3193.513 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CM1
remove
3,193,436 - -0.6
3,193,479 - +0.4
3,193,502 - -0.1
3,193,502 - +0.3
3,193,502 - +3.5
3,193,502 - +3.5
3,193,502 - +0.8
3,193,513 - +0.8

Or see this region's nucleotide sequence